Results 41 - 60 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16018 | 5' | -54.7 | NC_004065.1 | + | 24502 | 0.72 | 0.820238 |
Target: 5'- cCGCCGgcccugaGCGCCGGCCccAAGAUGG-CGg -3' miRNA: 3'- -GUGGC-------UGCGGCUGGauUUCUGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 113722 | 0.72 | 0.80417 |
Target: 5'- cCGCCGACGCCGAcaCCUcGGAGAacucCGG-CGa -3' miRNA: 3'- -GUGGCUGCGGCU--GGA-UUUCU----GCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 64606 | 0.72 | 0.786687 |
Target: 5'- gCGgCGACGcCCGcCCUAGAGACGGa-- -3' miRNA: 3'- -GUgGCUGC-GGCuGGAUUUCUGCCagc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 24112 | 0.74 | 0.70252 |
Target: 5'- gCGCCGACGUCGGCCUc--GGCGGcCc -3' miRNA: 3'- -GUGGCUGCGGCUGGAuuuCUGCCaGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 31659 | 0.76 | 0.603917 |
Target: 5'- gCGuuGACGCCGACCacccGGCGGUCc -3' miRNA: 3'- -GUggCUGCGGCUGGauuuCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 35181 | 0.69 | 0.913033 |
Target: 5'- gCACCGAaaacgauCCGACCgac-GACGGUCa -3' miRNA: 3'- -GUGGCUgc-----GGCUGGauuuCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 100472 | 0.69 | 0.913033 |
Target: 5'- aCACCGGCaUCGGCCcGAucGGACGGcUCGu -3' miRNA: 3'- -GUGGCUGcGGCUGGaUU--UCUGCC-AGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 32894 | 0.68 | 0.947606 |
Target: 5'- -uCCGAgaUGCCGuCCUGucGGgGGUCGg -3' miRNA: 3'- guGGCU--GCGGCuGGAUuuCUgCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 66435 | 0.68 | 0.947606 |
Target: 5'- uCACCGAC-CUGACUUucucGAcGCGGUCGa -3' miRNA: 3'- -GUGGCUGcGGCUGGAu---UUcUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 54369 | 0.68 | 0.947606 |
Target: 5'- aCACacaGACuCCGACCgUGAuGGCGGUCc -3' miRNA: 3'- -GUGg--CUGcGGCUGG-AUUuCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 82963 | 0.68 | 0.943335 |
Target: 5'- cCACUGGUGUCGuuACCUuuGAGACGGUCc -3' miRNA: 3'- -GUGGCUGCGGC--UGGAu-UUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 60940 | 0.68 | 0.938382 |
Target: 5'- gACCaGAUGUCGAaguagauCCUcAAGACGGUCu -3' miRNA: 3'- gUGG-CUGCGGCU-------GGAuUUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 30853 | 0.69 | 0.934128 |
Target: 5'- aGCCGACGaCGaccaGCCUGucGACGG-CGg -3' miRNA: 3'- gUGGCUGCgGC----UGGAUuuCUGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 19167 | 0.69 | 0.934128 |
Target: 5'- uGCCGAUGCCGcuuUCUGccGAGGCGGg-- -3' miRNA: 3'- gUGGCUGCGGCu--GGAU--UUCUGCCagc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 142428 | 0.69 | 0.929191 |
Target: 5'- uGCCGgcGCGCCGGCUccucagggucaUGAAGGCGaUCGa -3' miRNA: 3'- gUGGC--UGCGGCUGG-----------AUUUCUGCcAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 76418 | 0.69 | 0.929191 |
Target: 5'- gCGCCGcccgaGCCGACCcGAucAGuCGGUCGu -3' miRNA: 3'- -GUGGCug---CGGCUGGaUU--UCuGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 42100 | 0.69 | 0.924029 |
Target: 5'- uCGCCGGCGCCGACgUAcguGACcGUUu -3' miRNA: 3'- -GUGGCUGCGGCUGgAUuu-CUGcCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 19102 | 0.69 | 0.924029 |
Target: 5'- uCACUGACcgagaugauCCGGCCacGAGACGGUCc -3' miRNA: 3'- -GUGGCUGc--------GGCUGGauUUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 173633 | 0.69 | 0.918643 |
Target: 5'- uCGCCGcGCGuCCGACCgaaugugucGGAUGGUCu -3' miRNA: 3'- -GUGGC-UGC-GGCUGGauu------UCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 142344 | 0.69 | 0.918643 |
Target: 5'- aCGCCGGCGgCGAgagcaCCgucAGAGauGCGGUCGg -3' miRNA: 3'- -GUGGCUGCgGCU-----GGa--UUUC--UGCCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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