Results 61 - 80 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16018 | 5' | -54.7 | NC_004065.1 | + | 197743 | 0.68 | 0.955496 |
Target: 5'- uGgCGAuCGCCGACUcc-AGGCGGUCc -3' miRNA: 3'- gUgGCU-GCGGCUGGauuUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 140011 | 0.68 | 0.951659 |
Target: 5'- aGCUGACGCCG-CCgagAAGcGACGGcuccgUCGg -3' miRNA: 3'- gUGGCUGCGGCuGGa--UUU-CUGCC-----AGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 68868 | 0.68 | 0.947606 |
Target: 5'- gACCGAggaccUGCUGuACCUGcAGACGGcCGa -3' miRNA: 3'- gUGGCU-----GCGGC-UGGAUuUCUGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 32894 | 0.68 | 0.947606 |
Target: 5'- -uCCGAgaUGCCGuCCUGucGGgGGUCGg -3' miRNA: 3'- guGGCU--GCGGCuGGAUuuCUgCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 66435 | 0.68 | 0.947606 |
Target: 5'- uCACCGAC-CUGACUUucucGAcGCGGUCGa -3' miRNA: 3'- -GUGGCUGcGGCUGGAu---UUcUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 54369 | 0.68 | 0.947606 |
Target: 5'- aCACacaGACuCCGACCgUGAuGGCGGUCc -3' miRNA: 3'- -GUGg--CUGcGGCUGG-AUUuCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 42100 | 0.69 | 0.924029 |
Target: 5'- uCGCCGGCGCCGACgUAcguGACcGUUu -3' miRNA: 3'- -GUGGCUGCGGCUGgAUuu-CUGcCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 76418 | 0.69 | 0.929191 |
Target: 5'- gCGCCGcccgaGCCGACCcGAucAGuCGGUCGu -3' miRNA: 3'- -GUGGCug---CGGCUGGaUU--UCuGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 142428 | 0.69 | 0.929191 |
Target: 5'- uGCCGgcGCGCCGGCUccucagggucaUGAAGGCGaUCGa -3' miRNA: 3'- gUGGC--UGCGGCUGG-----------AUUUCUGCcAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 19167 | 0.69 | 0.934128 |
Target: 5'- uGCCGAUGCCGcuuUCUGccGAGGCGGg-- -3' miRNA: 3'- gUGGCUGCGGCu--GGAU--UUCUGCCagc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 30853 | 0.69 | 0.934128 |
Target: 5'- aGCCGACGaCGaccaGCCUGucGACGG-CGg -3' miRNA: 3'- gUGGCUGCgGC----UGGAUuuCUGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 60940 | 0.68 | 0.938382 |
Target: 5'- gACCaGAUGUCGAaguagauCCUcAAGACGGUCu -3' miRNA: 3'- gUGG-CUGCGGCU-------GGAuUUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 82963 | 0.68 | 0.943335 |
Target: 5'- cCACUGGUGUCGuuACCUuuGAGACGGUCc -3' miRNA: 3'- -GUGGCUGCGGC--UGGAu-UUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 165660 | 0.74 | 0.70252 |
Target: 5'- -uCCGGC-CgCGcCCUGAGGACGGUCGg -3' miRNA: 3'- guGGCUGcG-GCuGGAUUUCUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 79520 | 0.75 | 0.633616 |
Target: 5'- uCGCCGAgguaCGCaCGGCCgagcgggaGAAGGCGGUCGa -3' miRNA: 3'- -GUGGCU----GCG-GCUGGa-------UUUCUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 139794 | 0.76 | 0.603917 |
Target: 5'- uCGCCGACGCCGACCUcuuGGGAaacuaUGGUa- -3' miRNA: 3'- -GUGGCUGCGGCUGGAu--UUCU-----GCCAgc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 126296 | 0.77 | 0.564621 |
Target: 5'- aACCGACGCCGAa--GGAGGCGcGUCGu -3' miRNA: 3'- gUGGCUGCGGCUggaUUUCUGC-CAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 35186 | 0.78 | 0.51653 |
Target: 5'- cCGCCGugGUCGGCCUGGAGAacgUGG-CGg -3' miRNA: 3'- -GUGGCugCGGCUGGAUUUCU---GCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 111683 | 0.78 | 0.479276 |
Target: 5'- aCGCCGACGCCGACgccaUGGAcgucGGCGGUCc -3' miRNA: 3'- -GUGGCUGCGGCUGg---AUUU----CUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 63077 | 0.66 | 0.984784 |
Target: 5'- uCGCCGGuCGCCGGCg-AgcGACGGgCGu -3' miRNA: 3'- -GUGGCU-GCGGCUGgaUuuCUGCCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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