miRNA display CGI


Results 81 - 100 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 32402 0.7 0.881698
Target:  5'- cCGCCGACGUacuucgcguUGACCUGccacGAGACGGa-- -3'
miRNA:   3'- -GUGGCUGCG---------GCUGGAU----UUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 380 0.7 0.898668
Target:  5'- cCACUGcCGCCGGCCgggauggcgcacGAGACGGUg- -3'
miRNA:   3'- -GUGGCuGCGGCUGGau----------UUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 86157 0.7 0.90115
Target:  5'- aCGCCGGCGCCGuuCUu--GGCGGa-- -3'
miRNA:   3'- -GUGGCUGCGGCugGAuuuCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 194463 0.7 0.90115
Target:  5'- cCGCCuGugGCCG-CCUucucGGAGAUGGUUa -3'
miRNA:   3'- -GUGG-CugCGGCuGGA----UUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 151973 0.7 0.907202
Target:  5'- aCACCccgaucACGCCGACCUGAcgcaGGACcagguaGGUCa -3'
miRNA:   3'- -GUGGc-----UGCGGCUGGAUU----UCUG------CCAGc -5'
16018 5' -54.7 NC_004065.1 + 180477 0.7 0.907202
Target:  5'- --aCGugGCCGGcgauccCCUGcccAAGAUGGUCGg -3'
miRNA:   3'- gugGCugCGGCU------GGAU---UUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 203622 0.72 0.795497
Target:  5'- cCGCCGugGCgGAgUUGGAGGCGGgggCa -3'
miRNA:   3'- -GUGGCugCGgCUgGAUUUCUGCCa--Gc -5'
16018 5' -54.7 NC_004065.1 + 193386 0.72 0.792869
Target:  5'- uCGCCGACGuuGAUCUGGGGggcguguuucgcguACGGUUa -3'
miRNA:   3'- -GUGGCUGCggCUGGAUUUC--------------UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 111683 0.78 0.479276
Target:  5'- aCGCCGACGCCGACgccaUGGAcgucGGCGGUCc -3'
miRNA:   3'- -GUGGCUGCGGCUGg---AUUU----CUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 35186 0.78 0.51653
Target:  5'- cCGCCGugGUCGGCCUGGAGAacgUGG-CGg -3'
miRNA:   3'- -GUGGCugCGGCUGGAUUUCU---GCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 126296 0.77 0.564621
Target:  5'- aACCGACGCCGAa--GGAGGCGcGUCGu -3'
miRNA:   3'- gUGGCUGCGGCUggaUUUCUGC-CAGC- -5'
16018 5' -54.7 NC_004065.1 + 139794 0.76 0.603917
Target:  5'- uCGCCGACGCCGACCUcuuGGGAaacuaUGGUa- -3'
miRNA:   3'- -GUGGCUGCGGCUGGAu--UUCU-----GCCAgc -5'
16018 5' -54.7 NC_004065.1 + 79520 0.75 0.633616
Target:  5'- uCGCCGAgguaCGCaCGGCCgagcgggaGAAGGCGGUCGa -3'
miRNA:   3'- -GUGGCU----GCG-GCUGGa-------UUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 165660 0.74 0.70252
Target:  5'- -uCCGGC-CgCGcCCUGAGGACGGUCGg -3'
miRNA:   3'- guGGCUGcG-GCuGGAUUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 94493 0.74 0.70252
Target:  5'- -uCCGACGUCGACgUc--GACGGUCGa -3'
miRNA:   3'- guGGCUGCGGCUGgAuuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 182644 0.73 0.777747
Target:  5'- uGCCGACGgCGGCCgcgcuggacugUGGAGuACGGUCu -3'
miRNA:   3'- gUGGCUGCgGCUGG-----------AUUUC-UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 94211 0.73 0.777747
Target:  5'- uCGCCGACGCCGAU--GAAGAuCGGagGa -3'
miRNA:   3'- -GUGGCUGCGGCUGgaUUUCU-GCCagC- -5'
16018 5' -54.7 NC_004065.1 + 198006 0.72 0.786687
Target:  5'- aCACUG-CGCgaUGGCCUcGGAGGCGGUCGc -3'
miRNA:   3'- -GUGGCuGCG--GCUGGA-UUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 151381 0.72 0.786687
Target:  5'- gCGCUGGCgGCCGAUCUcuuggguggcGGAGGCgGGUCGg -3'
miRNA:   3'- -GUGGCUG-CGGCUGGA----------UUUCUG-CCAGC- -5'
16018 5' -54.7 NC_004065.1 + 81706 0.72 0.786687
Target:  5'- aCACCGugGgCGACCU---GGCGGcCGa -3'
miRNA:   3'- -GUGGCugCgGCUGGAuuuCUGCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.