miRNA display CGI


Results 121 - 140 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 126296 0.77 0.564621
Target:  5'- aACCGACGCCGAa--GGAGGCGcGUCGu -3'
miRNA:   3'- gUGGCUGCGGCUggaUUUCUGC-CAGC- -5'
16018 5' -54.7 NC_004065.1 + 35186 0.78 0.51653
Target:  5'- cCGCCGugGUCGGCCUGGAGAacgUGG-CGg -3'
miRNA:   3'- -GUGGCugCGGCUGGAUUUCU---GCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 111683 0.78 0.479276
Target:  5'- aCGCCGACGCCGACgccaUGGAcgucGGCGGUCc -3'
miRNA:   3'- -GUGGCUGCGGCUGg---AUUU----CUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 78605 0.71 0.836526
Target:  5'- aACgCGACGUCGucgcgccGCCUGAGGugaacGCGGUCGg -3'
miRNA:   3'- gUG-GCUGCGGC-------UGGAUUUC-----UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 173913 0.71 0.837323
Target:  5'- gCGCCGcCGUCGuCCg--GGACGGUCa -3'
miRNA:   3'- -GUGGCuGCGGCuGGauuUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 25816 0.69 0.924029
Target:  5'- gACCGACaagGCCGACUaucaucccGACGGUCu -3'
miRNA:   3'- gUGGCUG---CGGCUGGauuu----CUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 144229 0.69 0.918643
Target:  5'- uCGCCGACGCCGguucucgcGCCU-----CGGUCGc -3'
miRNA:   3'- -GUGGCUGCGGC--------UGGAuuucuGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 66548 0.69 0.918643
Target:  5'- cCACCGGCGCCG-CC----GACGGagcUCGa -3'
miRNA:   3'- -GUGGCUGCGGCuGGauuuCUGCC---AGC- -5'
16018 5' -54.7 NC_004065.1 + 64179 0.69 0.918643
Target:  5'- gACCGuccggcccCGCCGucCCUAGuGACGGUCu -3'
miRNA:   3'- gUGGCu-------GCGGCu-GGAUUuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 147349 0.69 0.913033
Target:  5'- aGCCGugGCCGACCcugcgcaccAGA-GGUUGg -3'
miRNA:   3'- gUGGCugCGGCUGGauu------UCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 180477 0.7 0.907202
Target:  5'- --aCGugGCCGGcgauccCCUGcccAAGAUGGUCGg -3'
miRNA:   3'- gugGCugCGGCU------GGAU---UUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 151973 0.7 0.907202
Target:  5'- aCACCccgaucACGCCGACCUGAcgcaGGACcagguaGGUCa -3'
miRNA:   3'- -GUGGc-----UGCGGCUGGAUU----UCUG------CCAGc -5'
16018 5' -54.7 NC_004065.1 + 194463 0.7 0.90115
Target:  5'- cCGCCuGugGCCG-CCUucucGGAGAUGGUUa -3'
miRNA:   3'- -GUGG-CugCGGCuGGA----UUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 86157 0.7 0.90115
Target:  5'- aCGCCGGCGCCGuuCUu--GGCGGa-- -3'
miRNA:   3'- -GUGGCUGCGGCugGAuuuCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 380 0.7 0.898668
Target:  5'- cCACUGcCGCCGGCCgggauggcgcacGAGACGGUg- -3'
miRNA:   3'- -GUGGCuGCGGCUGGau----------UUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 32402 0.7 0.881698
Target:  5'- cCGCCGACGUacuucgcguUGACCUGccacGAGACGGa-- -3'
miRNA:   3'- -GUGGCUGCG---------GCUGGAU----UUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 87697 0.7 0.881698
Target:  5'- cCGCCGGCGUucgaGACCUc---GCGGUCGa -3'
miRNA:   3'- -GUGGCUGCGg---CUGGAuuucUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 100578 0.7 0.873387
Target:  5'- aGCgCGACGCCggaGACCUuagguaugauGGCGGUCGc -3'
miRNA:   3'- gUG-GCUGCGG---CUGGAuuu-------CUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 118718 0.71 0.866963
Target:  5'- aCGCCGACgagauccuuGCCGGCggaggugUUGAAGAUGGUCu -3'
miRNA:   3'- -GUGGCUG---------CGGCUG-------GAUUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 30789 0.71 0.852878
Target:  5'- aCGCCGACGaugaCGACUgacGGACGGaCGg -3'
miRNA:   3'- -GUGGCUGCg---GCUGGauuUCUGCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.