miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 84071 0.69 0.924029
Target:  5'- aGCCGAuggcucggauccUGCCGACCgucAGGGCGGcCa -3'
miRNA:   3'- gUGGCU------------GCGGCUGGau-UUCUGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 173913 0.71 0.837323
Target:  5'- gCGCCGcCGUCGuCCg--GGACGGUCa -3'
miRNA:   3'- -GUGGCuGCGGCuGGauuUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 35186 0.78 0.51653
Target:  5'- cCGCCGugGUCGGCCUGGAGAacgUGG-CGg -3'
miRNA:   3'- -GUGGCugCGGCUGGAUUUCU---GCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 25816 0.69 0.924029
Target:  5'- gACCGACaagGCCGACUaucaucccGACGGUCu -3'
miRNA:   3'- gUGGCUG---CGGCUGGauuu----CUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 111683 0.78 0.479276
Target:  5'- aCGCCGACGCCGACgccaUGGAcgucGGCGGUCc -3'
miRNA:   3'- -GUGGCUGCGGCUGg---AUUU----CUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 205527 0.67 0.968765
Target:  5'- gGCCGGCGCUcagGGCCggc-GGCGGUg- -3'
miRNA:   3'- gUGGCUGCGG---CUGGauuuCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 139794 0.76 0.603917
Target:  5'- uCGCCGACGCCGACCUcuuGGGAaacuaUGGUa- -3'
miRNA:   3'- -GUGGCUGCGGCUGGAu--UUCU-----GCCAgc -5'
16018 5' -54.7 NC_004065.1 + 80398 0.67 0.965751
Target:  5'- uGCCGACGgCG-CCggu-GACGGUgGa -3'
miRNA:   3'- gUGGCUGCgGCuGGauuuCUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 31641 0.67 0.962538
Target:  5'- --aCGACGCCGGgCUAcGGGAC-GUCGg -3'
miRNA:   3'- gugGCUGCGGCUgGAU-UUCUGcCAGC- -5'
16018 5' -54.7 NC_004065.1 + 65326 0.68 0.951659
Target:  5'- gACCGGCGgCGGCggcggcagcagCUGcGGGugGGUCGg -3'
miRNA:   3'- gUGGCUGCgGCUG-----------GAU-UUCugCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 198344 0.68 0.946769
Target:  5'- gCACCGACGCaccuucgcuuggGACCgccGGGUGGUCGg -3'
miRNA:   3'- -GUGGCUGCGg-----------CUGGauuUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 169856 0.69 0.934128
Target:  5'- gGCCaGCGUCGACCUGugcauGGCGGgCGc -3'
miRNA:   3'- gUGGcUGCGGCUGGAUuu---CUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 207787 0.69 0.929191
Target:  5'- gACCauguugGGCGCCGGCacgauGACGGUCa -3'
miRNA:   3'- gUGG------CUGCGGCUGgauuuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 64179 0.69 0.918643
Target:  5'- gACCGuccggcccCGCCGucCCUAGuGACGGUCu -3'
miRNA:   3'- gUGGCu-------GCGGCu-GGAUUuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 151973 0.7 0.907202
Target:  5'- aCACCccgaucACGCCGACCUGAcgcaGGACcagguaGGUCa -3'
miRNA:   3'- -GUGGc-----UGCGGCUGGAUU----UCUG------CCAGc -5'
16018 5' -54.7 NC_004065.1 + 32402 0.7 0.881698
Target:  5'- cCGCCGACGUacuucgcguUGACCUGccacGAGACGGa-- -3'
miRNA:   3'- -GUGGCUGCG---------GCUGGAU----UUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 118718 0.71 0.866963
Target:  5'- aCGCCGACgagauccuuGCCGGCggaggugUUGAAGAUGGUCu -3'
miRNA:   3'- -GUGGCUG---------CGGCUG-------GAUUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 203622 0.72 0.795497
Target:  5'- cCGCCGugGCgGAgUUGGAGGCGGgggCa -3'
miRNA:   3'- -GUGGCugCGgCUgGAUUUCUGCCa--Gc -5'
16018 5' -54.7 NC_004065.1 + 151381 0.72 0.786687
Target:  5'- gCGCUGGCgGCCGAUCUcuuggguggcGGAGGCgGGUCGg -3'
miRNA:   3'- -GUGGCUG-CGGCUGGA----------UUUCUG-CCAGC- -5'
16018 5' -54.7 NC_004065.1 + 94493 0.74 0.70252
Target:  5'- -uCCGACGUCGACgUc--GACGGUCGa -3'
miRNA:   3'- guGGCUGCGGCUGgAuuuCUGCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.