miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 208006 0.69 0.934128
Target:  5'- gGCCGugGCCGGgUUAGugccGGCGG-CGa -3'
miRNA:   3'- gUGGCugCGGCUgGAUUu---CUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 76532 0.68 0.943335
Target:  5'- gACCGAUGCCcuGACUcuUGgcGAUGGUCa -3'
miRNA:   3'- gUGGCUGCGG--CUGG--AUuuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 193386 0.72 0.792869
Target:  5'- uCGCCGACGuuGAUCUGGGGggcguguuucgcguACGGUUa -3'
miRNA:   3'- -GUGGCUGCggCUGGAUUUC--------------UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 78605 0.71 0.836526
Target:  5'- aACgCGACGUCGucgcgccGCCUGAGGugaacGCGGUCGg -3'
miRNA:   3'- gUG-GCUGCGGC-------UGGAUUUC-----UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 100578 0.7 0.873387
Target:  5'- aGCgCGACGCCggaGACCUuagguaugauGGCGGUCGc -3'
miRNA:   3'- gUG-GCUGCGG---CUGGAuuu-------CUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 380 0.7 0.898668
Target:  5'- cCACUGcCGCCGGCCgggauggcgcacGAGACGGUg- -3'
miRNA:   3'- -GUGGCuGCGGCUGGau----------UUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 147349 0.69 0.913033
Target:  5'- aGCCGugGCCGACCcugcgcaccAGA-GGUUGg -3'
miRNA:   3'- gUGGCugCGGCUGGauu------UCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 144229 0.69 0.918643
Target:  5'- uCGCCGACGCCGguucucgcGCCU-----CGGUCGc -3'
miRNA:   3'- -GUGGCUGCGGC--------UGGAuuucuGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 84071 0.69 0.924029
Target:  5'- aGCCGAuggcucggauccUGCCGACCgucAGGGCGGcCa -3'
miRNA:   3'- gUGGCU------------GCGGCUGGau-UUCUGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 208709 0.69 0.924029
Target:  5'- cCGCCG-CGCaCG-CC--GAGGCGGUCGu -3'
miRNA:   3'- -GUGGCuGCG-GCuGGauUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 23888 0.66 0.982994
Target:  5'- -cUCGAUaGCCGGCgUUAcAGAUGGUCGa -3'
miRNA:   3'- guGGCUG-CGGCUG-GAUuUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 83279 0.66 0.981049
Target:  5'- cCGCCGACGCCcACaUAGAuGugGG-CGa -3'
miRNA:   3'- -GUGGCUGCGGcUGgAUUU-CugCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 84316 0.68 0.949253
Target:  5'- cCACCGACcucuccuccuacccCCGACCcguUAgcGGCGGUCGu -3'
miRNA:   3'- -GUGGCUGc-------------GGCUGG---AUuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 130483 0.68 0.958768
Target:  5'- cCGCCGcggcgagacgggaGCGCCGACCagcuGACGGagGu -3'
miRNA:   3'- -GUGGC-------------UGCGGCUGGauuuCUGCCagC- -5'
16018 5' -54.7 NC_004065.1 + 80398 0.67 0.965751
Target:  5'- uGCCGACGgCG-CCggu-GACGGUgGa -3'
miRNA:   3'- gUGGCUGCgGCuGGauuuCUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 205527 0.67 0.968765
Target:  5'- gGCCGGCGCUcagGGCCggc-GGCGGUg- -3'
miRNA:   3'- gUGGCUGCGG---CUGGauuuCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 131853 0.67 0.971585
Target:  5'- aUACC-ACGCUGAgCCUAGGcGGCGGUgGc -3'
miRNA:   3'- -GUGGcUGCGGCU-GGAUUU-CUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 87607 0.67 0.974217
Target:  5'- aGCCGgcGCGCCGGCaggcgAAAGAUGGcCc -3'
miRNA:   3'- gUGGC--UGCGGCUGga---UUUCUGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 153941 0.66 0.976668
Target:  5'- -cCCGAgCGCCucaagGACCUcAAGAgGGUCu -3'
miRNA:   3'- guGGCU-GCGG-----CUGGAuUUCUgCCAGc -5'
16018 5' -54.7 NC_004065.1 + 100019 0.66 0.978943
Target:  5'- uCGCCGGCucGUCGcuGCCUcgGGGCGGUa- -3'
miRNA:   3'- -GUGGCUG--CGGC--UGGAuuUCUGCCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.