miRNA display CGI


Results 81 - 100 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 151526 0.69 0.929191
Target:  5'- gGCCGcUGCCGGCC---GGGCGGUg- -3'
miRNA:   3'- gUGGCuGCGGCUGGauuUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 84071 0.69 0.924029
Target:  5'- aGCCGAuggcucggauccUGCCGACCgucAGGGCGGcCa -3'
miRNA:   3'- gUGGCU------------GCGGCUGGau-UUCUGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 166310 0.67 0.974217
Target:  5'- --aCGGCGCCGACCaccAGGCGaUCa -3'
miRNA:   3'- gugGCUGCGGCUGGauuUCUGCcAGc -5'
16018 5' -54.7 NC_004065.1 + 153941 0.66 0.976668
Target:  5'- -cCCGAgCGCCucaagGACCUcAAGAgGGUCu -3'
miRNA:   3'- guGGCU-GCGG-----CUGGAuUUCUgCCAGc -5'
16018 5' -54.7 NC_004065.1 + 81669 0.67 0.965751
Target:  5'- uCGCUGACGCUgacggaccggguGACC-AAGGACGG-CGn -3'
miRNA:   3'- -GUGGCUGCGG------------CUGGaUUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 123116 0.67 0.971585
Target:  5'- uCGCCGAUGCUGuaguuGCCgu-AGugGGUUu -3'
miRNA:   3'- -GUGGCUGCGGC-----UGGauuUCugCCAGc -5'
16018 5' -54.7 NC_004065.1 + 115200 0.67 0.971585
Target:  5'- gGCCGugGCCG-CCgc--GACGGg-- -3'
miRNA:   3'- gUGGCugCGGCuGGauuuCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 140011 0.68 0.951659
Target:  5'- aGCUGACGCCG-CCgagAAGcGACGGcuccgUCGg -3'
miRNA:   3'- gUGGCUGCGGCuGGa--UUU-CUGCC-----AGC- -5'
16018 5' -54.7 NC_004065.1 + 50588 0.67 0.974217
Target:  5'- gCACCcuacugucuucgGGCGCCGGCCUcuuccucGGGACGGagGc -3'
miRNA:   3'- -GUGG------------CUGCGGCUGGAu------UUCUGCCagC- -5'
16018 5' -54.7 NC_004065.1 + 60339 0.66 0.976668
Target:  5'- uGCCGGCGCCGuACgCguuGGugcgcACGGUCa -3'
miRNA:   3'- gUGGCUGCGGC-UG-GauuUC-----UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 68868 0.68 0.947606
Target:  5'- gACCGAggaccUGCUGuACCUGcAGACGGcCGa -3'
miRNA:   3'- gUGGCU-----GCGGC-UGGAUuUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 32894 0.68 0.947606
Target:  5'- -uCCGAgaUGCCGuCCUGucGGgGGUCGg -3'
miRNA:   3'- guGGCU--GCGGCuGGAUuuCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 66435 0.68 0.947606
Target:  5'- uCACCGAC-CUGACUUucucGAcGCGGUCGa -3'
miRNA:   3'- -GUGGCUGcGGCUGGAu---UUcUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 229310 0.66 0.980846
Target:  5'- uCACCGGCGUCGcguuacgacgggcAUCUcGAaacccGGGCGGUCGc -3'
miRNA:   3'- -GUGGCUGCGGC-------------UGGA-UU-----UCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 172581 0.66 0.979805
Target:  5'- cCGCCGACGCUaagaaaagagacacaGACCacGAGAUGGa-- -3'
miRNA:   3'- -GUGGCUGCGG---------------CUGGauUUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 162133 0.66 0.978943
Target:  5'- aACCGAaGCgGACCUGAAaACGGg-- -3'
miRNA:   3'- gUGGCUgCGgCUGGAUUUcUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 193472 0.66 0.976668
Target:  5'- aCGuuGACGUaguaGACCccgaUGucGGCGGUCGa -3'
miRNA:   3'- -GUggCUGCGg---CUGG----AUuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 109878 0.66 0.976668
Target:  5'- cCACCGGCGUCG-CCgc-GGcCGcGUCGg -3'
miRNA:   3'- -GUGGCUGCGGCuGGauuUCuGC-CAGC- -5'
16018 5' -54.7 NC_004065.1 + 35181 0.69 0.913033
Target:  5'- gCACCGAaaacgauCCGACCgac-GACGGUCa -3'
miRNA:   3'- -GUGGCUgc-----GGCUGGauuuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 24434 0.7 0.907202
Target:  5'- uGCCGACGuaGACCUcgGGAGGCuGG-CGg -3'
miRNA:   3'- gUGGCUGCggCUGGA--UUUCUG-CCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.