miRNA display CGI


Results 101 - 120 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 143136 0.67 0.971585
Target:  5'- gACCGGCGCCGcgACCUGcgu-CGGUg- -3'
miRNA:   3'- gUGGCUGCGGC--UGGAUuucuGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 115200 0.67 0.971585
Target:  5'- gGCCGugGCCG-CCgc--GACGGg-- -3'
miRNA:   3'- gUGGCugCGGCuGGauuuCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 123116 0.67 0.971585
Target:  5'- uCGCCGAUGCUGuaguuGCCgu-AGugGGUUu -3'
miRNA:   3'- -GUGGCUGCGGC-----UGGauuUCugCCAGc -5'
16018 5' -54.7 NC_004065.1 + 229310 0.66 0.980846
Target:  5'- uCACCGGCGUCGcguuacgacgggcAUCUcGAaacccGGGCGGUCGc -3'
miRNA:   3'- -GUGGCUGCGGC-------------UGGA-UU-----UCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 172581 0.66 0.979805
Target:  5'- cCGCCGACGCUaagaaaagagacacaGACCacGAGAUGGa-- -3'
miRNA:   3'- -GUGGCUGCGG---------------CUGGauUUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 50588 0.67 0.974217
Target:  5'- gCACCcuacugucuucgGGCGCCGGCCUcuuccucGGGACGGagGc -3'
miRNA:   3'- -GUGG------------CUGCGGCUGGAu------UUCUGCCagC- -5'
16018 5' -54.7 NC_004065.1 + 193472 0.66 0.976668
Target:  5'- aCGuuGACGUaguaGACCccgaUGucGGCGGUCGa -3'
miRNA:   3'- -GUggCUGCGg---CUGG----AUuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 208248 0.67 0.968765
Target:  5'- gACCGAggaGCCGACg-GAAcGCGGUCa -3'
miRNA:   3'- gUGGCUg--CGGCUGgaUUUcUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 126729 0.67 0.968765
Target:  5'- aGgCGGCGCUGAUCUcgaAGGGAUGGUg- -3'
miRNA:   3'- gUgGCUGCGGCUGGA---UUUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 77545 0.67 0.968765
Target:  5'- gUACCGGCGCgCGACC-GAGGGC--UCGu -3'
miRNA:   3'- -GUGGCUGCG-GCUGGaUUUCUGccAGC- -5'
16018 5' -54.7 NC_004065.1 + 82963 0.68 0.943335
Target:  5'- cCACUGGUGUCGuuACCUuuGAGACGGUCc -3'
miRNA:   3'- -GUGGCUGCGGC--UGGAu-UUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 54369 0.68 0.947606
Target:  5'- aCACacaGACuCCGACCgUGAuGGCGGUCc -3'
miRNA:   3'- -GUGg--CUGcGGCUGG-AUUuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 66435 0.68 0.947606
Target:  5'- uCACCGAC-CUGACUUucucGAcGCGGUCGa -3'
miRNA:   3'- -GUGGCUGcGGCUGGAu---UUcUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 32894 0.68 0.947606
Target:  5'- -uCCGAgaUGCCGuCCUGucGGgGGUCGg -3'
miRNA:   3'- guGGCU--GCGGCuGGAUuuCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 68868 0.68 0.947606
Target:  5'- gACCGAggaccUGCUGuACCUGcAGACGGcCGa -3'
miRNA:   3'- gUGGCU-----GCGGC-UGGAUuUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 140011 0.68 0.951659
Target:  5'- aGCUGACGCCG-CCgagAAGcGACGGcuccgUCGg -3'
miRNA:   3'- gUGGCUGCGGCuGGa--UUU-CUGCC-----AGC- -5'
16018 5' -54.7 NC_004065.1 + 91605 0.67 0.965751
Target:  5'- uCAUCGGCGuCCuGACCgcgccgcaGAAGucGCGGUCGa -3'
miRNA:   3'- -GUGGCUGC-GG-CUGGa-------UUUC--UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 76377 0.67 0.968765
Target:  5'- gCGCCGGCGCCG-CCgc-GGAUGaGcUCGc -3'
miRNA:   3'- -GUGGCUGCGGCuGGauuUCUGC-C-AGC- -5'
16018 5' -54.7 NC_004065.1 + 122480 0.67 0.965751
Target:  5'- -cCCGguaGCGCaCGACCcgcagcuGGGCGGUCGc -3'
miRNA:   3'- guGGC---UGCG-GCUGGauu----UCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 60339 0.66 0.976668
Target:  5'- uGCCGGCGCCGuACgCguuGGugcgcACGGUCa -3'
miRNA:   3'- gUGGCUGCGGC-UG-GauuUC-----UGCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.