miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 3' -61.1 NC_004065.1 + 20167 0.66 0.801711
Target:  5'- cAGCCAUGCGGCGgACGUcucggacuaccaaaaUCGCUCg-- -3'
miRNA:   3'- aUUGGUGCGCCGC-UGCG---------------GGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 80318 0.66 0.798327
Target:  5'- gGGCCgGCGCGGCcGCgGCCC-CCCg-- -3'
miRNA:   3'- aUUGG-UGCGCCGcUG-CGGGcGGGauc -5'
16019 3' -61.1 NC_004065.1 + 34953 0.66 0.798327
Target:  5'- -cGCCGCGCGcucgcccgaccuGCacuucagagaGACGCCgugCGCCCUGGu -3'
miRNA:   3'- auUGGUGCGC------------CG----------CUGCGG---GCGGGAUC- -5'
16019 3' -61.1 NC_004065.1 + 188507 0.66 0.798327
Target:  5'- aGGCCGCGacucuGGCGGgacCGCCCGCgCg-- -3'
miRNA:   3'- aUUGGUGCg----CCGCU---GCGGGCGgGauc -5'
16019 3' -61.1 NC_004065.1 + 83309 0.66 0.798327
Target:  5'- gAGCUcucgucgucgaGCGCGGCGuCGCCCauGUCgUGGg -3'
miRNA:   3'- aUUGG-----------UGCGCCGCuGCGGG--CGGgAUC- -5'
16019 3' -61.1 NC_004065.1 + 201362 0.66 0.798327
Target:  5'- -uGCUGCGCGaGCuGCGCCuCGCCggGGg -3'
miRNA:   3'- auUGGUGCGC-CGcUGCGG-GCGGgaUC- -5'
16019 3' -61.1 NC_004065.1 + 117095 0.66 0.789773
Target:  5'- aUAACgGguuCGCGaGCG-UGCCgCGCCCUGGu -3'
miRNA:   3'- -AUUGgU---GCGC-CGCuGCGG-GCGGGAUC- -5'
16019 3' -61.1 NC_004065.1 + 141343 0.66 0.789773
Target:  5'- -uACgACGCGGaCGuCGUCCGCUCgcgGGu -3'
miRNA:   3'- auUGgUGCGCC-GCuGCGGGCGGGa--UC- -5'
16019 3' -61.1 NC_004065.1 + 109840 0.66 0.789773
Target:  5'- gGGCgaGCGCGGCGuCGCUC-CCCUc- -3'
miRNA:   3'- aUUGg-UGCGCCGCuGCGGGcGGGAuc -5'
16019 3' -61.1 NC_004065.1 + 153249 0.66 0.789773
Target:  5'- -cGCCGuCGCGGCGGCGaUgCGCCg--- -3'
miRNA:   3'- auUGGU-GCGCCGCUGC-GgGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 61390 0.66 0.789773
Target:  5'- -cGCCGCGcCGGCucCGCCCGCg---- -3'
miRNA:   3'- auUGGUGC-GCCGcuGCGGGCGggauc -5'
16019 3' -61.1 NC_004065.1 + 197138 0.66 0.789773
Target:  5'- --cCCA-GCGGCaGACGCUCGCCg--- -3'
miRNA:   3'- auuGGUgCGCCG-CUGCGGGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 118161 0.66 0.789773
Target:  5'- -cACCGagacCGCGGCGGCGgCCGUCa--- -3'
miRNA:   3'- auUGGU----GCGCCGCUGCgGGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 152912 0.66 0.781093
Target:  5'- cUGACgAUGuCGGCGGCGCugCCGCCg--- -3'
miRNA:   3'- -AUUGgUGC-GCCGCUGCG--GGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 114583 0.66 0.781093
Target:  5'- --cCCGCGCGGCGGagUGCCCuaCgaGGg -3'
miRNA:   3'- auuGGUGCGCCGCU--GCGGGcgGgaUC- -5'
16019 3' -61.1 NC_004065.1 + 202318 0.66 0.781093
Target:  5'- cGAgCACG-GGCcaGACGCCCGauCCCUAc -3'
miRNA:   3'- aUUgGUGCgCCG--CUGCGGGC--GGGAUc -5'
16019 3' -61.1 NC_004065.1 + 139662 0.66 0.781093
Target:  5'- -uGCgGCGCGuGCGGCGgCCGCUgCUGu -3'
miRNA:   3'- auUGgUGCGC-CGCUGCgGGCGG-GAUc -5'
16019 3' -61.1 NC_004065.1 + 179740 0.66 0.781093
Target:  5'- -cGCCGCGCGGaCGGCGgUCUcgggGCCCg-- -3'
miRNA:   3'- auUGGUGCGCC-GCUGC-GGG----CGGGauc -5'
16019 3' -61.1 NC_004065.1 + 71941 0.66 0.781093
Target:  5'- gUGGCCugGUcggaGGCGACGC-CGCCg--- -3'
miRNA:   3'- -AUUGGugCG----CCGCUGCGgGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 26417 0.66 0.781093
Target:  5'- -cGCCACgGCGGCGGCGgCC-UCCgAGa -3'
miRNA:   3'- auUGGUG-CGCCGCUGCgGGcGGGaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.