miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 3' -61.1 NC_004065.1 + 71941 0.66 0.781093
Target:  5'- gUGGCCugGUcggaGGCGACGC-CGCCg--- -3'
miRNA:   3'- -AUUGGugCG----CCGCUGCGgGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 46827 0.66 0.754367
Target:  5'- aGAUCAuCGCGGcCGACGuguacaCCUGCCCcAGg -3'
miRNA:   3'- aUUGGU-GCGCC-GCUGC------GGGCGGGaUC- -5'
16019 3' -61.1 NC_004065.1 + 197138 0.66 0.789773
Target:  5'- --cCCA-GCGGCaGACGCUCGCCg--- -3'
miRNA:   3'- auuGGUgCGCCG-CUGCGGGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 118161 0.66 0.789773
Target:  5'- -cACCGagacCGCGGCGGCGgCCGUCa--- -3'
miRNA:   3'- auUGGU----GCGCCGCUGCgGGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 42853 0.66 0.754367
Target:  5'- aGACCccucggagaGCGCGaGgGACGCCaCGCaCCUGu -3'
miRNA:   3'- aUUGG---------UGCGC-CgCUGCGG-GCG-GGAUc -5'
16019 3' -61.1 NC_004065.1 + 26417 0.66 0.781093
Target:  5'- -cGCCACgGCGGCGGCGgCC-UCCgAGa -3'
miRNA:   3'- auUGGUG-CGCCGCUGCgGGcGGGaUC- -5'
16019 3' -61.1 NC_004065.1 + 145175 0.66 0.772294
Target:  5'- --uCCACGUGGgagagcgucaUGACGCCCGCUUUc- -3'
miRNA:   3'- auuGGUGCGCC----------GCUGCGGGCGGGAuc -5'
16019 3' -61.1 NC_004065.1 + 34953 0.66 0.798327
Target:  5'- -cGCCGCGCGcucgcccgaccuGCacuucagagaGACGCCgugCGCCCUGGu -3'
miRNA:   3'- auUGGUGCGC------------CG----------CUGCGG---GCGGGAUC- -5'
16019 3' -61.1 NC_004065.1 + 114583 0.66 0.781093
Target:  5'- --cCCGCGCGGCGGagUGCCCuaCgaGGg -3'
miRNA:   3'- auuGGUGCGCCGCU--GCGGGcgGgaUC- -5'
16019 3' -61.1 NC_004065.1 + 113427 0.66 0.772294
Target:  5'- gAGCUGCgcagaGCGGCGGCcgggggGCCCGCCgUGc -3'
miRNA:   3'- aUUGGUG-----CGCCGCUG------CGGGCGGgAUc -5'
16019 3' -61.1 NC_004065.1 + 191838 0.66 0.763382
Target:  5'- -uGCCGuCGUGGUGACGgCCGCgaCUAu -3'
miRNA:   3'- auUGGU-GCGCCGCUGCgGGCGg-GAUc -5'
16019 3' -61.1 NC_004065.1 + 152912 0.66 0.781093
Target:  5'- cUGACgAUGuCGGCGGCGCugCCGCCg--- -3'
miRNA:   3'- -AUUGgUGC-GCCGCUGCG--GGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 98662 0.66 0.780218
Target:  5'- ---aCGCGCGGUugcugacggggggGACGCCCGCgCg-- -3'
miRNA:   3'- auugGUGCGCCG-------------CUGCGGGCGgGauc -5'
16019 3' -61.1 NC_004065.1 + 211480 0.66 0.772294
Target:  5'- cGGCCAUGCGaGCcaGGCGCCCGgugacgauCCCg-- -3'
miRNA:   3'- aUUGGUGCGC-CG--CUGCGGGC--------GGGauc -5'
16019 3' -61.1 NC_004065.1 + 128412 0.66 0.763382
Target:  5'- gAGCgGCaGCGGCGGCGgCgCCGCCa--- -3'
miRNA:   3'- aUUGgUG-CGCCGCUGC-G-GGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 174573 0.66 0.771407
Target:  5'- gAAUCGugaauauCGCGGCGGCGaCCC-CCgCUAGg -3'
miRNA:   3'- aUUGGU-------GCGCCGCUGC-GGGcGG-GAUC- -5'
16019 3' -61.1 NC_004065.1 + 25551 0.66 0.781093
Target:  5'- aGACgGCGuCGGCGuCGgcCCCGCgCCUGa -3'
miRNA:   3'- aUUGgUGC-GCCGCuGC--GGGCG-GGAUc -5'
16019 3' -61.1 NC_004065.1 + 83182 0.66 0.763382
Target:  5'- aGACCAgGCGcuccCGGCgGCCCGCUCUc- -3'
miRNA:   3'- aUUGGUgCGCc---GCUG-CGGGCGGGAuc -5'
16019 3' -61.1 NC_004065.1 + 109705 0.66 0.760688
Target:  5'- aGAUCGCGCGGCGAcccucggggggcaaCGCUuuCGCCUa-- -3'
miRNA:   3'- aUUGGUGCGCCGCU--------------GCGG--GCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 110179 0.66 0.754367
Target:  5'- cGACCucUGCGGCGGcCGCgacgcgccgCCGCCCgucgAGa -3'
miRNA:   3'- aUUGGu-GCGCCGCU-GCG---------GGCGGGa---UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.