miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 3' -61.1 NC_004065.1 + 145175 0.66 0.772294
Target:  5'- --uCCACGUGGgagagcgucaUGACGCCCGCUUUc- -3'
miRNA:   3'- auuGGUGCGCC----------GCUGCGGGCGGGAuc -5'
16019 3' -61.1 NC_004065.1 + 42853 0.66 0.754367
Target:  5'- aGACCccucggagaGCGCGaGgGACGCCaCGCaCCUGu -3'
miRNA:   3'- aUUGG---------UGCGC-CgCUGCGG-GCG-GGAUc -5'
16019 3' -61.1 NC_004065.1 + 153249 0.66 0.789773
Target:  5'- -cGCCGuCGCGGCGGCGaUgCGCCg--- -3'
miRNA:   3'- auUGGU-GCGCCGCUGC-GgGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 109705 0.66 0.760688
Target:  5'- aGAUCGCGCGGCGAcccucggggggcaaCGCUuuCGCCUa-- -3'
miRNA:   3'- aUUGGUGCGCCGCU--------------GCGG--GCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 117438 0.66 0.772294
Target:  5'- cGGgCACGuuGCGACGCagcacgCCGCCCaUGGa -3'
miRNA:   3'- aUUgGUGCgcCGCUGCG------GGCGGG-AUC- -5'
16019 3' -61.1 NC_004065.1 + 80318 0.66 0.798327
Target:  5'- gGGCCgGCGCGGCcGCgGCCC-CCCg-- -3'
miRNA:   3'- aUUGG-UGCGCCGcUG-CGGGcGGGauc -5'
16019 3' -61.1 NC_004065.1 + 61390 0.66 0.789773
Target:  5'- -cGCCGCGcCGGCucCGCCCGCg---- -3'
miRNA:   3'- auUGGUGC-GCCGcuGCGGGCGggauc -5'
16019 3' -61.1 NC_004065.1 + 659 0.66 0.772294
Target:  5'- cGGCCGCGCGuaGCGAgCaCCCGCUCg-- -3'
miRNA:   3'- aUUGGUGCGC--CGCU-GcGGGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 141343 0.66 0.789773
Target:  5'- -uACgACGCGGaCGuCGUCCGCUCgcgGGu -3'
miRNA:   3'- auUGgUGCGCC-GCuGCGGGCGGGa--UC- -5'
16019 3' -61.1 NC_004065.1 + 46827 0.66 0.754367
Target:  5'- aGAUCAuCGCGGcCGACGuguacaCCUGCCCcAGg -3'
miRNA:   3'- aUUGGU-GCGCC-GCUGC------GGGCGGGaUC- -5'
16019 3' -61.1 NC_004065.1 + 110179 0.66 0.754367
Target:  5'- cGACCucUGCGGCGGcCGCgacgcgccgCCGCCCgucgAGa -3'
miRNA:   3'- aUUGGu-GCGCCGCU-GCG---------GGCGGGa---UC- -5'
16019 3' -61.1 NC_004065.1 + 128412 0.66 0.763382
Target:  5'- gAGCgGCaGCGGCGGCGgCgCCGCCa--- -3'
miRNA:   3'- aUUGgUG-CGCCGCUGC-G-GGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 113427 0.66 0.772294
Target:  5'- gAGCUGCgcagaGCGGCGGCcgggggGCCCGCCgUGc -3'
miRNA:   3'- aUUGGUG-----CGCCGCUG------CGGGCGGgAUc -5'
16019 3' -61.1 NC_004065.1 + 174573 0.66 0.771407
Target:  5'- gAAUCGugaauauCGCGGCGGCGaCCC-CCgCUAGg -3'
miRNA:   3'- aUUGGU-------GCGCCGCUGC-GGGcGG-GAUC- -5'
16019 3' -61.1 NC_004065.1 + 191838 0.66 0.763382
Target:  5'- -uGCCGuCGUGGUGACGgCCGCgaCUAu -3'
miRNA:   3'- auUGGU-GCGCCGCUGCgGGCGg-GAUc -5'
16019 3' -61.1 NC_004065.1 + 211480 0.66 0.772294
Target:  5'- cGGCCAUGCGaGCcaGGCGCCCGgugacgauCCCg-- -3'
miRNA:   3'- aUUGGUGCGC-CG--CUGCGGGC--------GGGauc -5'
16019 3' -61.1 NC_004065.1 + 77978 0.66 0.772294
Target:  5'- aGACgCugGCcGCGGCGagCCGCCCcGGg -3'
miRNA:   3'- aUUG-GugCGcCGCUGCg-GGCGGGaUC- -5'
16019 3' -61.1 NC_004065.1 + 83182 0.66 0.763382
Target:  5'- aGACCAgGCGcuccCGGCgGCCCGCUCUc- -3'
miRNA:   3'- aUUGGUgCGCc---GCUG-CGGGCGGGAuc -5'
16019 3' -61.1 NC_004065.1 + 32665 0.66 0.754367
Target:  5'- cGGCC-CGCGGCGGagaaucgGCCCGUuuuucUCUAGa -3'
miRNA:   3'- aUUGGuGCGCCGCUg------CGGGCG-----GGAUC- -5'
16019 3' -61.1 NC_004065.1 + 168774 0.67 0.708003
Target:  5'- -cGCCGCGCaGGCcuucGACGCcuuccucuCCGCCCUc- -3'
miRNA:   3'- auUGGUGCG-CCG----CUGCG--------GGCGGGAuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.