miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 3' -61.1 NC_004065.1 + 64598 1.07 0.002124
Target:  5'- aUAACCACGCGGCGACGCCCGCCCUAGa -3'
miRNA:   3'- -AUUGGUGCGCCGCUGCGGGCGGGAUC- -5'
16019 3' -61.1 NC_004065.1 + 120241 0.8 0.157537
Target:  5'- -uGCC-CGCGGCGuaGCGCCUGCCCUGc -3'
miRNA:   3'- auUGGuGCGCCGC--UGCGGGCGGGAUc -5'
16019 3' -61.1 NC_004065.1 + 3906 0.79 0.169304
Target:  5'- --uCCACGCGGCGACcCCCGCCUg-- -3'
miRNA:   3'- auuGGUGCGCCGCUGcGGGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 102971 0.79 0.181851
Target:  5'- --uCCGCGCGguaguagucGCGGCGCCCGCCCUu- -3'
miRNA:   3'- auuGGUGCGC---------CGCUGCGGGCGGGAuc -5'
16019 3' -61.1 NC_004065.1 + 137479 0.76 0.269328
Target:  5'- -uGCgCGCGCGuGCGcGCGCCCGCCCg-- -3'
miRNA:   3'- auUG-GUGCGC-CGC-UGCGGGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 184301 0.74 0.349595
Target:  5'- -uACCACGCcauUGGCGCCCGCCCaUAGc -3'
miRNA:   3'- auUGGUGCGcc-GCUGCGGGCGGG-AUC- -5'
16019 3' -61.1 NC_004065.1 + 41057 0.74 0.321064
Target:  5'- gGGCCGCGCGGCGACGaa-GCCgaAGa -3'
miRNA:   3'- aUUGGUGCGCCGCUGCgggCGGgaUC- -5'
16019 3' -61.1 NC_004065.1 + 527 0.74 0.32803
Target:  5'- -uACUACGCGGUGGCGCgCC-CCCUGu -3'
miRNA:   3'- auUGGUGCGCCGCUGCG-GGcGGGAUc -5'
16019 3' -61.1 NC_004065.1 + 153283 0.73 0.379886
Target:  5'- aGGCCGC-CGGCGccGCGCCCGUCCc-- -3'
miRNA:   3'- aUUGGUGcGCCGC--UGCGGGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 45542 0.73 0.387728
Target:  5'- -cGCCGCgGCGGCGGCGgcagCCGCCCa-- -3'
miRNA:   3'- auUGGUG-CGCCGCUGCg---GGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 71971 0.73 0.379886
Target:  5'- gAGCCGgGCagcccggaGGCGACGCauGCCCUGGa -3'
miRNA:   3'- aUUGGUgCG--------CCGCUGCGggCGGGAUC- -5'
16019 3' -61.1 NC_004065.1 + 34878 0.73 0.387728
Target:  5'- -uGCUGCGCGGCGugGaCCUGUCCa-- -3'
miRNA:   3'- auUGGUGCGCCGCugC-GGGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 104307 0.72 0.445497
Target:  5'- --uUCGCGCaGGCGG-GCCCGCCCcAGg -3'
miRNA:   3'- auuGGUGCG-CCGCUgCGGGCGGGaUC- -5'
16019 3' -61.1 NC_004065.1 + 65227 0.72 0.454139
Target:  5'- -uGCCG-GCGGUGGCGCCCGUCUc-- -3'
miRNA:   3'- auUGGUgCGCCGCUGCGGGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 32731 0.72 0.454139
Target:  5'- gAACUugGCGGCGuCGCgcgagaagCCGCCCa-- -3'
miRNA:   3'- aUUGGugCGCCGCuGCG--------GGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 107527 0.72 0.454139
Target:  5'- gGugCGCGCGGCGAcCGCCCaGCUgcGGg -3'
miRNA:   3'- aUugGUGCGCCGCU-GCGGG-CGGgaUC- -5'
16019 3' -61.1 NC_004065.1 + 109195 0.72 0.436949
Target:  5'- aGGCCG-GCGGCGGCGCCuCGgCCUc- -3'
miRNA:   3'- aUUGGUgCGCCGCUGCGG-GCgGGAuc -5'
16019 3' -61.1 NC_004065.1 + 198109 0.72 0.411884
Target:  5'- cGGCCACGCugucGGCGACGCgCCGCgUcAGg -3'
miRNA:   3'- aUUGGUGCG----CCGCUGCG-GGCGgGaUC- -5'
16019 3' -61.1 NC_004065.1 + 548 0.72 0.411884
Target:  5'- --uCCGCGaCGaGCGGCGCCCgGCCCggAGa -3'
miRNA:   3'- auuGGUGC-GC-CGCUGCGGG-CGGGa-UC- -5'
16019 3' -61.1 NC_004065.1 + 56111 0.72 0.411064
Target:  5'- gUGACCgucccggACGaCGGCGGCGCUCGCCUUc- -3'
miRNA:   3'- -AUUGG-------UGC-GCCGCUGCGGGCGGGAuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.