miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 3' -61.1 NC_004065.1 + 78 0.69 0.591651
Target:  5'- -uGCCGCGgcgcccuCGGCGGCaaaaaagugcaGCCCGCCCa-- -3'
miRNA:   3'- auUGGUGC-------GCCGCUG-----------CGGGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 446 0.71 0.489574
Target:  5'- gAGCCGCccucGCGGCGuaACGUCCGgggaCCCUGGg -3'
miRNA:   3'- aUUGGUG----CGCCGC--UGCGGGC----GGGAUC- -5'
16019 3' -61.1 NC_004065.1 + 527 0.74 0.32803
Target:  5'- -uACUACGCGGUGGCGCgCC-CCCUGu -3'
miRNA:   3'- auUGGUGCGCCGCUGCG-GGcGGGAUc -5'
16019 3' -61.1 NC_004065.1 + 548 0.72 0.411884
Target:  5'- --uCCGCGaCGaGCGGCGCCCgGCCCggAGa -3'
miRNA:   3'- auuGGUGC-GC-CGCUGCGGG-CGGGa-UC- -5'
16019 3' -61.1 NC_004065.1 + 659 0.66 0.772294
Target:  5'- cGGCCGCGCGuaGCGAgCaCCCGCUCg-- -3'
miRNA:   3'- aUUGGUGCGC--CGCU-GcGGGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 3906 0.79 0.169304
Target:  5'- --uCCACGCGGCGACcCCCGCCUg-- -3'
miRNA:   3'- auuGGUGCGCCGCUGcGGGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 20167 0.66 0.801711
Target:  5'- cAGCCAUGCGGCGgACGUcucggacuaccaaaaUCGCUCg-- -3'
miRNA:   3'- aUUGGUGCGCCGC-UGCG---------------GGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 23264 0.68 0.679434
Target:  5'- gGACCgACGCGGUacgacuGGCGCCCGUagCCg-- -3'
miRNA:   3'- aUUGG-UGCGCCG------CUGCGGGCG--GGauc -5'
16019 3' -61.1 NC_004065.1 + 23841 0.68 0.660201
Target:  5'- -uACCAUGCGGCaccccauUGgUCGCCCUGGa -3'
miRNA:   3'- auUGGUGCGCCGcu-----GCgGGCGGGAUC- -5'
16019 3' -61.1 NC_004065.1 + 24855 0.68 0.650551
Target:  5'- gAugUugGCGGCGACGgCgGCCUc-- -3'
miRNA:   3'- aUugGugCGCCGCUGCgGgCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 25551 0.66 0.781093
Target:  5'- aGACgGCGuCGGCGuCGgcCCCGCgCCUGa -3'
miRNA:   3'- aUUGgUGC-GCCGCuGC--GGGCG-GGAUc -5'
16019 3' -61.1 NC_004065.1 + 26417 0.66 0.781093
Target:  5'- -cGCCACgGCGGCGGCGgCC-UCCgAGa -3'
miRNA:   3'- auUGGUG-CGCCGCUGCgGGcGGGaUC- -5'
16019 3' -61.1 NC_004065.1 + 28739 0.68 0.679434
Target:  5'- aGACCGCgGUGGCgGACGCCUuccuGCgCCUGu -3'
miRNA:   3'- aUUGGUG-CGCCG-CUGCGGG----CG-GGAUc -5'
16019 3' -61.1 NC_004065.1 + 30585 0.69 0.611889
Target:  5'- --uCCGcCGCGGCGAgCGCCuCGUCCg-- -3'
miRNA:   3'- auuGGU-GCGCCGCU-GCGG-GCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 31086 0.68 0.669831
Target:  5'- gUGGCCACG-GGCGGCGaucagaaCGCCCg-- -3'
miRNA:   3'- -AUUGGUGCgCCGCUGCgg-----GCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 31999 0.67 0.698527
Target:  5'- gAACCGC-CGGCGAcCGCgaCCGCCUccgAGg -3'
miRNA:   3'- aUUGGUGcGCCGCU-GCG--GGCGGGa--UC- -5'
16019 3' -61.1 NC_004065.1 + 32665 0.66 0.754367
Target:  5'- cGGCC-CGCGGCGGagaaucgGCCCGUuuuucUCUAGa -3'
miRNA:   3'- aUUGGuGCGCCGCUg------CGGGCG-----GGAUC- -5'
16019 3' -61.1 NC_004065.1 + 32731 0.72 0.454139
Target:  5'- gAACUugGCGGCGuCGCgcgagaagCCGCCCa-- -3'
miRNA:   3'- aUUGGugCGCCGCuGCG--------GGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 32883 0.71 0.50777
Target:  5'- gAGgCGCGcCGGCGAgCGUCUGCCgCUGGg -3'
miRNA:   3'- aUUgGUGC-GCCGCU-GCGGGCGG-GAUC- -5'
16019 3' -61.1 NC_004065.1 + 33386 0.67 0.745255
Target:  5'- ---gCGCGCGGagccucucgaGGCGCUCGCCCcGGc -3'
miRNA:   3'- auugGUGCGCCg---------CUGCGGGCGGGaUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.