miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 3' -61.1 NC_004065.1 + 90137 0.69 0.602241
Target:  5'- aGGCCcCGCGGCcaccuCGUCCGUCCUGc -3'
miRNA:   3'- aUUGGuGCGCCGcu---GCGGGCGGGAUc -5'
16019 3' -61.1 NC_004065.1 + 201019 0.71 0.50777
Target:  5'- aGGCCGCGUGcgcGCGGCGCCuCGCCa--- -3'
miRNA:   3'- aUUGGUGCGC---CGCUGCGG-GCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 196959 0.7 0.535581
Target:  5'- --uCCACGCucccagacacaaGGCGGCGCCCGCauCCUc- -3'
miRNA:   3'- auuGGUGCG------------CCGCUGCGGGCG--GGAuc -5'
16019 3' -61.1 NC_004065.1 + 201208 0.7 0.535581
Target:  5'- gGGCgGCGCGGCGACGUgCGUgCa-- -3'
miRNA:   3'- aUUGgUGCGCCGCUGCGgGCGgGauc -5'
16019 3' -61.1 NC_004065.1 + 74663 0.7 0.535581
Target:  5'- gGACC--GCGGCG-CGUCCGCCgUAGc -3'
miRNA:   3'- aUUGGugCGCCGCuGCGGGCGGgAUC- -5'
16019 3' -61.1 NC_004065.1 + 229446 0.7 0.554416
Target:  5'- -cACCACGgGGUGGCGCugCCGCCa--- -3'
miRNA:   3'- auUGGUGCgCCGCUGCG--GGCGGgauc -5'
16019 3' -61.1 NC_004065.1 + 149704 0.7 0.57344
Target:  5'- -cGCCGgggggcCGCGGCcGCGCCgGCCCUcGGa -3'
miRNA:   3'- auUGGU------GCGCCGcUGCGGgCGGGA-UC- -5'
16019 3' -61.1 NC_004065.1 + 118093 0.7 0.577264
Target:  5'- -cACCGCGaCGGCGGCGCCCauggcgucucucgucGCCg--- -3'
miRNA:   3'- auUGGUGC-GCCGCUGCGGG---------------CGGgauc -5'
16019 3' -61.1 NC_004065.1 + 74162 0.69 0.602241
Target:  5'- gAACCcCGCaGGCGGCGUucgagccgaugaCCGCCCUc- -3'
miRNA:   3'- aUUGGuGCG-CCGCUGCG------------GGCGGGAuc -5'
16019 3' -61.1 NC_004065.1 + 109434 0.71 0.489574
Target:  5'- cAGCCGCGCuGGCGGCGCguguaUCGCCUc-- -3'
miRNA:   3'- aUUGGUGCG-CCGCUGCG-----GGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 32731 0.72 0.454139
Target:  5'- gAACUugGCGGCGuCGCgcgagaagCCGCCCa-- -3'
miRNA:   3'- aUUGGugCGCCGCuGCG--------GGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 109195 0.72 0.436949
Target:  5'- aGGCCG-GCGGCGGCGCCuCGgCCUc- -3'
miRNA:   3'- aUUGGUgCGCCGCUGCGG-GCgGGAuc -5'
16019 3' -61.1 NC_004065.1 + 102971 0.79 0.181851
Target:  5'- --uCCGCGCGguaguagucGCGGCGCCCGCCCUu- -3'
miRNA:   3'- auuGGUGCGC---------CGCUGCGGGCGGGAuc -5'
16019 3' -61.1 NC_004065.1 + 41057 0.74 0.321064
Target:  5'- gGGCCGCGCGGCGACGaa-GCCgaAGa -3'
miRNA:   3'- aUUGGUGCGCCGCUGCgggCGGgaUC- -5'
16019 3' -61.1 NC_004065.1 + 184301 0.74 0.349595
Target:  5'- -uACCACGCcauUGGCGCCCGCCCaUAGc -3'
miRNA:   3'- auUGGUGCGcc-GCUGCGGGCGGG-AUC- -5'
16019 3' -61.1 NC_004065.1 + 71971 0.73 0.379886
Target:  5'- gAGCCGgGCagcccggaGGCGACGCauGCCCUGGa -3'
miRNA:   3'- aUUGGUgCG--------CCGCUGCGggCGGGAUC- -5'
16019 3' -61.1 NC_004065.1 + 45542 0.73 0.387728
Target:  5'- -cGCCGCgGCGGCGGCGgcagCCGCCCa-- -3'
miRNA:   3'- auUGGUG-CGCCGCUGCg---GGCGGGauc -5'
16019 3' -61.1 NC_004065.1 + 56111 0.72 0.411064
Target:  5'- gUGACCgucccggACGaCGGCGGCGCUCGCCUUc- -3'
miRNA:   3'- -AUUGG-------UGC-GCCGCUGCGGGCGGGAuc -5'
16019 3' -61.1 NC_004065.1 + 548 0.72 0.411884
Target:  5'- --uCCGCGaCGaGCGGCGCCCgGCCCggAGa -3'
miRNA:   3'- auuGGUGC-GC-CGCUGCGGG-CGGGa-UC- -5'
16019 3' -61.1 NC_004065.1 + 198109 0.72 0.411884
Target:  5'- cGGCCACGCugucGGCGACGCgCCGCgUcAGg -3'
miRNA:   3'- aUUGGUGCG----CCGCUGCG-GGCGgGaUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.