Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16019 | 3' | -61.1 | NC_004065.1 | + | 120241 | 0.8 | 0.157537 |
Target: 5'- -uGCC-CGCGGCGuaGCGCCUGCCCUGc -3' miRNA: 3'- auUGGuGCGCCGC--UGCGGGCGGGAUc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 123864 | 0.7 | 0.535581 |
Target: 5'- --uCCugGUGGCGACGCCUaggGUCCa-- -3' miRNA: 3'- auuGGugCGCCGCUGCGGG---CGGGauc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 129250 | 0.7 | 0.535581 |
Target: 5'- cGACCGCGCGaaGCuGA-GCCCGCCCc-- -3' miRNA: 3'- aUUGGUGCGC--CG-CUgCGGGCGGGauc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 34953 | 0.66 | 0.798327 |
Target: 5'- -cGCCGCGCGcucgcccgaccuGCacuucagagaGACGCCgugCGCCCUGGu -3' miRNA: 3'- auUGGUGCGC------------CG----------CUGCGG---GCGGGAUC- -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 153283 | 0.73 | 0.379886 |
Target: 5'- aGGCCGC-CGGCGccGCGCCCGUCCc-- -3' miRNA: 3'- aUUGGUGcGCCGC--UGCGGGCGGGauc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 34878 | 0.73 | 0.387728 |
Target: 5'- -uGCUGCGCGGCGugGaCCUGUCCa-- -3' miRNA: 3'- auUGGUGCGCCGCugC-GGGCGGGauc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 65227 | 0.72 | 0.454139 |
Target: 5'- -uGCCG-GCGGUGGCGCCCGUCUc-- -3' miRNA: 3'- auUGGUgCGCCGCUGCGGGCGGGauc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 107527 | 0.72 | 0.454139 |
Target: 5'- gGugCGCGCGGCGAcCGCCCaGCUgcGGg -3' miRNA: 3'- aUugGUGCGCCGCU-GCGGG-CGGgaUC- -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 99943 | 0.71 | 0.48059 |
Target: 5'- gGACCGcCGCGGCGGCGgCUGCUgCUGc -3' miRNA: 3'- aUUGGU-GCGCCGCUGCgGGCGG-GAUc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 32883 | 0.71 | 0.50777 |
Target: 5'- gAGgCGCGcCGGCGAgCGUCUGCCgCUGGg -3' miRNA: 3'- aUUgGUGC-GCCGCU-GCGGGCGG-GAUC- -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 446 | 0.71 | 0.489574 |
Target: 5'- gAGCCGCccucGCGGCGuaACGUCCGgggaCCCUGGg -3' miRNA: 3'- aUUGGUG----CGCCGC--UGCGGGC----GGGAUC- -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 105298 | 0.72 | 0.462869 |
Target: 5'- cAACCACGCGuGCGGCGCggGCCUg-- -3' miRNA: 3'- aUUGGUGCGC-CGCUGCGggCGGGauc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 3906 | 0.79 | 0.169304 |
Target: 5'- --uCCACGCGGCGACcCCCGCCUg-- -3' miRNA: 3'- auuGGUGCGCCGCUGcGGGCGGGauc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 111913 | 0.71 | 0.489574 |
Target: 5'- --uCCGCGCGGCGACGagagaCGCCaUGGg -3' miRNA: 3'- auuGGUGCGCCGCUGCgg---GCGGgAUC- -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 137479 | 0.76 | 0.269328 |
Target: 5'- -uGCgCGCGCGuGCGcGCGCCCGCCCg-- -3' miRNA: 3'- auUG-GUGCGC-CGC-UGCGGGCGGGauc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 121294 | 0.72 | 0.454139 |
Target: 5'- --cCCGCGUgagGGCGACGCgCGCCCc-- -3' miRNA: 3'- auuGGUGCG---CCGCUGCGgGCGGGauc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 130071 | 0.71 | 0.505023 |
Target: 5'- -cGCCGCGgcgguggucgacuaCGGCGaugccguucgGCGCCCGCCCUu- -3' miRNA: 3'- auUGGUGC--------------GCCGC----------UGCGGGCGGGAuc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 120146 | 0.7 | 0.535581 |
Target: 5'- cGACgCGgcCGCGGCGACGCcgguggcaCCGCCCg-- -3' miRNA: 3'- aUUG-GU--GCGCCGCUGCG--------GGCGGGauc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 527 | 0.74 | 0.32803 |
Target: 5'- -uACUACGCGGUGGCGCgCC-CCCUGu -3' miRNA: 3'- auUGGUGCGCCGCUGCG-GGcGGGAUc -5' |
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16019 | 3' | -61.1 | NC_004065.1 | + | 104307 | 0.72 | 0.445497 |
Target: 5'- --uUCGCGCaGGCGG-GCCCGCCCcAGg -3' miRNA: 3'- auuGGUGCG-CCGCUgCGGGCGGGaUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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