miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 201979 0.66 0.90309
Target:  5'- aUCCGcGAgaacucgucgAGGUCGUUGGCCGCcaacgcgaugGCGUCc -3'
miRNA:   3'- aAGGU-CU----------UCCGGUAGCUGGCG----------CGCAG- -5'
16019 5' -58 NC_004065.1 + 170388 0.66 0.90309
Target:  5'- -aCCGGcuGGaCCguGUCGACCGaCGCGgUCa -3'
miRNA:   3'- aaGGUCuuCC-GG--UAGCUGGC-GCGC-AG- -5'
16019 5' -58 NC_004065.1 + 215022 0.66 0.90309
Target:  5'- aUUCCAGAGGGCCGUC-ACC-CaCGa- -3'
miRNA:   3'- -AAGGUCUUCCGGUAGcUGGcGcGCag -5'
16019 5' -58 NC_004065.1 + 147905 0.66 0.90309
Target:  5'- -gCCGGAuacgucagccGGGCgCAgcuggagaUCGACUGCGaCGUCg -3'
miRNA:   3'- aaGGUCU----------UCCG-GU--------AGCUGGCGC-GCAG- -5'
16019 5' -58 NC_004065.1 + 123634 0.66 0.90309
Target:  5'- cUCCAGGucGGCCGaC-ACCG-GCGUCa -3'
miRNA:   3'- aAGGUCUu-CCGGUaGcUGGCgCGCAG- -5'
16019 5' -58 NC_004065.1 + 31898 0.66 0.90309
Target:  5'- cUCgAGAgcGGGCCugaCG-CgGCGCGUCg -3'
miRNA:   3'- aAGgUCU--UCCGGua-GCuGgCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 78299 0.66 0.90309
Target:  5'- cUCUcGAGGGCC-UCgGACUGCGUGg- -3'
miRNA:   3'- aAGGuCUUCCGGuAG-CUGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 166802 0.66 0.896871
Target:  5'- gUCCGGAcggaugGGGCCGUC-AUCGUGCa-- -3'
miRNA:   3'- aAGGUCU------UCCGGUAGcUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 132357 0.66 0.896871
Target:  5'- cUUguGGAGGCgGUagcacgggcaGGCCGuCGCGUCg -3'
miRNA:   3'- aAGguCUUCCGgUAg---------CUGGC-GCGCAG- -5'
16019 5' -58 NC_004065.1 + 162687 0.66 0.896871
Target:  5'- -nCCGGAGcGCCAuUCGACCgGCGgGUa -3'
miRNA:   3'- aaGGUCUUcCGGU-AGCUGG-CGCgCAg -5'
16019 5' -58 NC_004065.1 + 169257 0.66 0.896871
Target:  5'- --gCGGGAGGCCG-CGGCCcuGUGCGg- -3'
miRNA:   3'- aagGUCUUCCGGUaGCUGG--CGCGCag -5'
16019 5' -58 NC_004065.1 + 119202 0.66 0.890434
Target:  5'- gUCUGGAGGcguGCCGUUGgccuucgcguACCGCaGCGUCa -3'
miRNA:   3'- aAGGUCUUC---CGGUAGC----------UGGCG-CGCAG- -5'
16019 5' -58 NC_004065.1 + 89740 0.66 0.890434
Target:  5'- -gUCAGggGGUUGUCGACCacguacgacGCgGCGUUg -3'
miRNA:   3'- aaGGUCuuCCGGUAGCUGG---------CG-CGCAG- -5'
16019 5' -58 NC_004065.1 + 143217 0.66 0.890434
Target:  5'- gUUCCucAAGGCCGcguUCG-CCGCGCccGUCu -3'
miRNA:   3'- -AAGGucUUCCGGU---AGCuGGCGCG--CAG- -5'
16019 5' -58 NC_004065.1 + 196648 0.66 0.883784
Target:  5'- aUCCAG-GGGCCAguaGCgCGCgGCGUCu -3'
miRNA:   3'- aAGGUCuUCCGGUagcUG-GCG-CGCAG- -5'
16019 5' -58 NC_004065.1 + 107178 0.66 0.883784
Target:  5'- -gCCAGAGGGCgGUCGAgaCGgGagcCGUCg -3'
miRNA:   3'- aaGGUCUUCCGgUAGCUg-GCgC---GCAG- -5'
16019 5' -58 NC_004065.1 + 74993 0.66 0.879692
Target:  5'- -gUCGGuGAGGCCcugguagcuggcguuGUCGACCaGgGCGUCg -3'
miRNA:   3'- aaGGUC-UUCCGG---------------UAGCUGG-CgCGCAG- -5'
16019 5' -58 NC_004065.1 + 197514 0.66 0.876923
Target:  5'- cUCC-GAGGGaCC--CGGCCGCGCG-Cg -3'
miRNA:   3'- aAGGuCUUCC-GGuaGCUGGCGCGCaG- -5'
16019 5' -58 NC_004065.1 + 1005 0.66 0.876923
Target:  5'- cUgCGGGAGGCCGagugcgcgaucUCGcuCCGCGCGcUCc -3'
miRNA:   3'- aAgGUCUUCCGGU-----------AGCu-GGCGCGC-AG- -5'
16019 5' -58 NC_004065.1 + 210978 0.66 0.876923
Target:  5'- gUCaCAGAuguGGGCCAcCG-CCGC-CGUCg -3'
miRNA:   3'- aAG-GUCU---UCCGGUaGCuGGCGcGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.