miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 75122 0.69 0.743293
Target:  5'- aUCCGGc-GGCU-UCGAUCGCGCGaUCg -3'
miRNA:   3'- aAGGUCuuCCGGuAGCUGGCGCGC-AG- -5'
16019 5' -58 NC_004065.1 + 152811 0.69 0.752675
Target:  5'- -aUCAGcguGGCCAUCG-CCGUGCGg- -3'
miRNA:   3'- aaGGUCuu-CCGGUAGCuGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 87262 0.68 0.780186
Target:  5'- -aCCAGcAGGCCGUCG-UCGuCGCGg- -3'
miRNA:   3'- aaGGUCuUCCGGUAGCuGGC-GCGCag -5'
16019 5' -58 NC_004065.1 + 184173 0.68 0.789117
Target:  5'- -gUCGGAGcGGCCAUCGcgucCCGUGCGg- -3'
miRNA:   3'- aaGGUCUU-CCGGUAGCu---GGCGCGCag -5'
16019 5' -58 NC_004065.1 + 4489 0.68 0.789117
Target:  5'- -gCCAuuGAGGGCCAgCaGCUGCGCGUg -3'
miRNA:   3'- aaGGU--CUUCCGGUaGcUGGCGCGCAg -5'
16019 5' -58 NC_004065.1 + 64284 0.68 0.789117
Target:  5'- gUUCCuGGAAGGCg--CGG-CGCGCGUCu -3'
miRNA:   3'- -AAGG-UCUUCCGguaGCUgGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 117378 0.68 0.797915
Target:  5'- aUUCCuc--GGCCAuaucgacgcUCGGCCGCGCG-Cg -3'
miRNA:   3'- -AAGGucuuCCGGU---------AGCUGGCGCGCaG- -5'
16019 5' -58 NC_004065.1 + 24914 0.68 0.797915
Target:  5'- cUUCCGGAGGcGCCAUaucgagCGAUCGacaGCGUUu -3'
miRNA:   3'- -AAGGUCUUC-CGGUA------GCUGGCg--CGCAG- -5'
16019 5' -58 NC_004065.1 + 119620 0.68 0.797915
Target:  5'- --gCGGAGGagacGCCGUCGGCCGUgGCGUg -3'
miRNA:   3'- aagGUCUUC----CGGUAGCUGGCG-CGCAg -5'
16019 5' -58 NC_004065.1 + 56909 0.68 0.797915
Target:  5'- aUCCuc--GGCUgcgGUCGgaACCGCGCGUCg -3'
miRNA:   3'- aAGGucuuCCGG---UAGC--UGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 229557 0.68 0.815079
Target:  5'- -gCCcGGAGGCUgacucaggCGAgCGCGCGUCu -3'
miRNA:   3'- aaGGuCUUCCGGua------GCUgGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 201005 0.68 0.815079
Target:  5'- -gCCGGucugacucGAGGCCG-CGugCGCGCGg- -3'
miRNA:   3'- aaGGUC--------UUCCGGUaGCugGCGCGCag -5'
16019 5' -58 NC_004065.1 + 17961 0.67 0.82343
Target:  5'- -gCCGGAcGGUCGUCcgucuGCCGCGCGa- -3'
miRNA:   3'- aaGGUCUuCCGGUAGc----UGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 162585 0.67 0.82343
Target:  5'- -gCCGacAGGuCCGUCGugUGCGgGUCg -3'
miRNA:   3'- aaGGUcuUCC-GGUAGCugGCGCgCAG- -5'
16019 5' -58 NC_004065.1 + 109191 0.67 0.82343
Target:  5'- ---aAGAAGGCCggCGGCgGCGCcUCg -3'
miRNA:   3'- aaggUCUUCCGGuaGCUGgCGCGcAG- -5'
16019 5' -58 NC_004065.1 + 91256 0.67 0.82343
Target:  5'- -aCCuuGAcGCCAUCGACCGCGCc-- -3'
miRNA:   3'- aaGGucUUcCGGUAGCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 139004 0.67 0.831617
Target:  5'- cUCgGGAcgguGGCCAUgGACCGCGUc-- -3'
miRNA:   3'- aAGgUCUu---CCGGUAgCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 126275 0.67 0.831617
Target:  5'- gUCCGG-AGGCCc-CG-CCGCGCGa- -3'
miRNA:   3'- aAGGUCuUCCGGuaGCuGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 139478 0.67 0.831617
Target:  5'- gUUCgAGggGGCCGUCGGgCGgGaCGa- -3'
miRNA:   3'- -AAGgUCuuCCGGUAGCUgGCgC-GCag -5'
16019 5' -58 NC_004065.1 + 198890 0.67 0.846695
Target:  5'- -cCCAGggGGaucaccuucccguCCAgccucUCGAUCGCGCGcCg -3'
miRNA:   3'- aaGGUCuuCC-------------GGU-----AGCUGGCGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.