miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 1005 0.66 0.876923
Target:  5'- cUgCGGGAGGCCGagugcgcgaucUCGcuCCGCGCGcUCc -3'
miRNA:   3'- aAgGUCUUCCGGU-----------AGCu-GGCGCGC-AG- -5'
16019 5' -58 NC_004065.1 + 130457 0.66 0.876226
Target:  5'- -cCCAGAAccugacgcaccacGGCCGUCcGCCGCgGCGa- -3'
miRNA:   3'- aaGGUCUU-------------CCGGUAGcUGGCG-CGCag -5'
16019 5' -58 NC_004065.1 + 222833 0.66 0.874825
Target:  5'- -gCUAGgcGGCCAcagcucggucgucaUUGACaGCGCGUCc -3'
miRNA:   3'- aaGGUCuuCCGGU--------------AGCUGgCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 4280 0.66 0.869857
Target:  5'- -gCUGGggGuaGCCA-CGACgGCGUGUCg -3'
miRNA:   3'- aaGGUCuuC--CGGUaGCUGgCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 87171 0.66 0.869857
Target:  5'- gUCCAGGA-GCCccUGcACCGCGCGgUCg -3'
miRNA:   3'- aAGGUCUUcCGGuaGC-UGGCGCGC-AG- -5'
16019 5' -58 NC_004065.1 + 129331 0.66 0.869857
Target:  5'- -aCCAGggGGUCAUCcGAuCCGaGCGg- -3'
miRNA:   3'- aaGGUCuuCCGGUAG-CU-GGCgCGCag -5'
16019 5' -58 NC_004065.1 + 129866 0.66 0.869857
Target:  5'- -gUCAGGAGGUguUCGaccuguGCCGCGCGc- -3'
miRNA:   3'- aaGGUCUUCCGguAGC------UGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 227481 0.66 0.869857
Target:  5'- --aCGGAcGGCCGUCGACCGauCGg- -3'
miRNA:   3'- aagGUCUuCCGGUAGCUGGCgcGCag -5'
16019 5' -58 NC_004065.1 + 211325 0.66 0.869857
Target:  5'- gUCCGGAcuuucccaaAGGCCugagcCGACCgaggcggacucGUGCGUCg -3'
miRNA:   3'- aAGGUCU---------UCCGGua---GCUGG-----------CGCGCAG- -5'
16019 5' -58 NC_004065.1 + 33152 0.67 0.862589
Target:  5'- --gCAGggGgauGCCGUUGACgCGCGCGa- -3'
miRNA:   3'- aagGUCuuC---CGGUAGCUG-GCGCGCag -5'
16019 5' -58 NC_004065.1 + 31290 0.67 0.862589
Target:  5'- ---gAGGAGGaCGUCGGCgGCGuCGUCg -3'
miRNA:   3'- aaggUCUUCCgGUAGCUGgCGC-GCAG- -5'
16019 5' -58 NC_004065.1 + 60902 0.67 0.855125
Target:  5'- cUCgGGAAcugcuGGCCG-CGGCC-CGCGUCu -3'
miRNA:   3'- aAGgUCUU-----CCGGUaGCUGGcGCGCAG- -5'
16019 5' -58 NC_004065.1 + 28135 0.67 0.847471
Target:  5'- gUCUGGGAcGCCAUCGGCCucuGCGUGa- -3'
miRNA:   3'- aAGGUCUUcCGGUAGCUGG---CGCGCag -5'
16019 5' -58 NC_004065.1 + 128389 0.67 0.847471
Target:  5'- -cCCAGAGGuGCCcggauUCGACC-CGgGUCc -3'
miRNA:   3'- aaGGUCUUC-CGGu----AGCUGGcGCgCAG- -5'
16019 5' -58 NC_004065.1 + 129646 0.67 0.847471
Target:  5'- gUCUGGAAcacagacuGGCCGUCGACCG-GC-UCa -3'
miRNA:   3'- aAGGUCUU--------CCGGUAGCUGGCgCGcAG- -5'
16019 5' -58 NC_004065.1 + 198890 0.67 0.846695
Target:  5'- -cCCAGggGGaucaccuucccguCCAgccucUCGAUCGCGCGcCg -3'
miRNA:   3'- aaGGUCuuCC-------------GGU-----AGCUGGCGCGCaG- -5'
16019 5' -58 NC_004065.1 + 139478 0.67 0.831617
Target:  5'- gUUCgAGggGGCCGUCGGgCGgGaCGa- -3'
miRNA:   3'- -AAGgUCuuCCGGUAGCUgGCgC-GCag -5'
16019 5' -58 NC_004065.1 + 126275 0.67 0.831617
Target:  5'- gUCCGG-AGGCCc-CG-CCGCGCGa- -3'
miRNA:   3'- aAGGUCuUCCGGuaGCuGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 139004 0.67 0.831617
Target:  5'- cUCgGGAcgguGGCCAUgGACCGCGUc-- -3'
miRNA:   3'- aAGgUCUu---CCGGUAgCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 109191 0.67 0.82343
Target:  5'- ---aAGAAGGCCggCGGCgGCGCcUCg -3'
miRNA:   3'- aaggUCUUCCGGuaGCUGgCGCGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.