Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16019 | 5' | -58 | NC_004065.1 | + | 91256 | 0.67 | 0.82343 |
Target: 5'- -aCCuuGAcGCCAUCGACCGCGCc-- -3' miRNA: 3'- aaGGucUUcCGGUAGCUGGCGCGcag -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 162585 | 0.67 | 0.82343 |
Target: 5'- -gCCGacAGGuCCGUCGugUGCGgGUCg -3' miRNA: 3'- aaGGUcuUCC-GGUAGCugGCGCgCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 17961 | 0.67 | 0.82343 |
Target: 5'- -gCCGGAcGGUCGUCcgucuGCCGCGCGa- -3' miRNA: 3'- aaGGUCUuCCGGUAGc----UGGCGCGCag -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 201005 | 0.68 | 0.815079 |
Target: 5'- -gCCGGucugacucGAGGCCG-CGugCGCGCGg- -3' miRNA: 3'- aaGGUC--------UUCCGGUaGCugGCGCGCag -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 229557 | 0.68 | 0.815079 |
Target: 5'- -gCCcGGAGGCUgacucaggCGAgCGCGCGUCu -3' miRNA: 3'- aaGGuCUUCCGGua------GCUgGCGCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 119620 | 0.68 | 0.797915 |
Target: 5'- --gCGGAGGagacGCCGUCGGCCGUgGCGUg -3' miRNA: 3'- aagGUCUUC----CGGUAGCUGGCG-CGCAg -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 24914 | 0.68 | 0.797915 |
Target: 5'- cUUCCGGAGGcGCCAUaucgagCGAUCGacaGCGUUu -3' miRNA: 3'- -AAGGUCUUC-CGGUA------GCUGGCg--CGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 117378 | 0.68 | 0.797915 |
Target: 5'- aUUCCuc--GGCCAuaucgacgcUCGGCCGCGCG-Cg -3' miRNA: 3'- -AAGGucuuCCGGU---------AGCUGGCGCGCaG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 56909 | 0.68 | 0.797915 |
Target: 5'- aUCCuc--GGCUgcgGUCGgaACCGCGCGUCg -3' miRNA: 3'- aAGGucuuCCGG---UAGC--UGGCGCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 184173 | 0.68 | 0.789117 |
Target: 5'- -gUCGGAGcGGCCAUCGcgucCCGUGCGg- -3' miRNA: 3'- aaGGUCUU-CCGGUAGCu---GGCGCGCag -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 64284 | 0.68 | 0.789117 |
Target: 5'- gUUCCuGGAAGGCg--CGG-CGCGCGUCu -3' miRNA: 3'- -AAGG-UCUUCCGguaGCUgGCGCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 4489 | 0.68 | 0.789117 |
Target: 5'- -gCCAuuGAGGGCCAgCaGCUGCGCGUg -3' miRNA: 3'- aaGGU--CUUCCGGUaGcUGGCGCGCAg -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 87262 | 0.68 | 0.780186 |
Target: 5'- -aCCAGcAGGCCGUCG-UCGuCGCGg- -3' miRNA: 3'- aaGGUCuUCCGGUAGCuGGC-GCGCag -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 152811 | 0.69 | 0.752675 |
Target: 5'- -aUCAGcguGGCCAUCG-CCGUGCGg- -3' miRNA: 3'- aaGGUCuu-CCGGUAGCuGGCGCGCag -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 75122 | 0.69 | 0.743293 |
Target: 5'- aUCCGGc-GGCU-UCGAUCGCGCGaUCg -3' miRNA: 3'- aAGGUCuuCCGGuAGCUGGCGCGC-AG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 127927 | 0.69 | 0.724264 |
Target: 5'- -cUCGGuccGGCCAUCG-CCGCccGCGUCg -3' miRNA: 3'- aaGGUCuu-CCGGUAGCuGGCG--CGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 7855 | 0.7 | 0.704935 |
Target: 5'- -gCCauGGAGGGCCGcaacgaacgcuUCG-UCGCGCGUCg -3' miRNA: 3'- aaGG--UCUUCCGGU-----------AGCuGGCGCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 202676 | 0.7 | 0.699088 |
Target: 5'- -aCCAGAuGGUCAUCGguAggucgcauggcgguuCCGCGCGUCu -3' miRNA: 3'- aaGGUCUuCCGGUAGC--U---------------GGCGCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 212120 | 0.7 | 0.694201 |
Target: 5'- aUCCAGGAGGCgAcagucucUCGACgG-GCGUCc -3' miRNA: 3'- aAGGUCUUCCGgU-------AGCUGgCgCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 109846 | 0.7 | 0.694201 |
Target: 5'- --gCGGggGGCCAUCGcgcagguGCCGgGCGg- -3' miRNA: 3'- aagGUCuuCCGGUAGC-------UGGCgCGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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