miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 157929 0.7 0.685375
Target:  5'- gUCCAGucuGGCgAUCaGGCCGCGCa-- -3'
miRNA:   3'- aAGGUCuu-CCGgUAG-CUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 80312 0.7 0.665648
Target:  5'- gUCC-GAGGGCCGgcgCGGCCGCggccccccgGCGUUc -3'
miRNA:   3'- aAGGuCUUCCGGUa--GCUGGCG---------CGCAG- -5'
16019 5' -58 NC_004065.1 + 91190 0.71 0.645819
Target:  5'- --gCGGAAGcGCCGUCGGCgUGCGCGg- -3'
miRNA:   3'- aagGUCUUC-CGGUAGCUG-GCGCGCag -5'
16019 5' -58 NC_004065.1 + 138947 0.71 0.635885
Target:  5'- cUCCuG-GGGCCAgUCG-CUGCGCGUCu -3'
miRNA:   3'- aAGGuCuUCCGGU-AGCuGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 107444 0.71 0.635885
Target:  5'- -aCCAGGAGGUCGUgG-UCGgGCGUCu -3'
miRNA:   3'- aaGGUCUUCCGGUAgCuGGCgCGCAG- -5'
16019 5' -58 NC_004065.1 + 37887 0.71 0.625949
Target:  5'- --gCGGAAGGCCGUCuGGCgGC-CGUCg -3'
miRNA:   3'- aagGUCUUCCGGUAG-CUGgCGcGCAG- -5'
16019 5' -58 NC_004065.1 + 135475 0.71 0.616017
Target:  5'- -cCCAGGAGGUCAcCGGCuCGCGCa-- -3'
miRNA:   3'- aaGGUCUUCCGGUaGCUG-GCGCGcag -5'
16019 5' -58 NC_004065.1 + 162654 0.71 0.606096
Target:  5'- -cCCAGccuAGGCgugucuagacUCGACCGCGCGUCc -3'
miRNA:   3'- aaGGUCu--UCCGgu--------AGCUGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 94626 0.72 0.54718
Target:  5'- cUCCuGAcgGGGUCGggcgCGGCCgGCGCGUCa -3'
miRNA:   3'- aAGGuCU--UCCGGUa---GCUGG-CGCGCAG- -5'
16019 5' -58 NC_004065.1 + 130481 0.72 0.544275
Target:  5'- -gCCGGAcGGCaccauggagaugcuCAUCGAgCCGCGCGUCc -3'
miRNA:   3'- aaGGUCUuCCG--------------GUAGCU-GGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 151252 0.73 0.527915
Target:  5'- gUCCAGGuccuGGCCGcuaaccUCGACUGCGUGaUCa -3'
miRNA:   3'- aAGGUCUu---CCGGU------AGCUGGCGCGC-AG- -5'
16019 5' -58 NC_004065.1 + 26900 0.74 0.462747
Target:  5'- gUCCAG-AGGCCGcUCGACCGCaCGcCg -3'
miRNA:   3'- aAGGUCuUCCGGU-AGCUGGCGcGCaG- -5'
16019 5' -58 NC_004065.1 + 158822 0.74 0.453778
Target:  5'- cUUCAGGAGGCuCGUCuucagcaGCUGCGCGUCa -3'
miRNA:   3'- aAGGUCUUCCG-GUAGc------UGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 149705 0.77 0.310567
Target:  5'- -gCCGGggGGCCG-CGGCCGCGCc-- -3'
miRNA:   3'- aaGGUCuuCCGGUaGCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 64632 1.06 0.004304
Target:  5'- cUUCCAGAAGGCCAUCGACCGCGCGUCc -3'
miRNA:   3'- -AAGGUCUUCCGGUAGCUGGCGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.