miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 87171 0.66 0.869857
Target:  5'- gUCCAGGA-GCCccUGcACCGCGCGgUCg -3'
miRNA:   3'- aAGGUCUUcCGGuaGC-UGGCGCGC-AG- -5'
16019 5' -58 NC_004065.1 + 87262 0.68 0.780186
Target:  5'- -aCCAGcAGGCCGUCG-UCGuCGCGg- -3'
miRNA:   3'- aaGGUCuUCCGGUAGCuGGC-GCGCag -5'
16019 5' -58 NC_004065.1 + 89740 0.66 0.890434
Target:  5'- -gUCAGggGGUUGUCGACCacguacgacGCgGCGUUg -3'
miRNA:   3'- aaGGUCuuCCGGUAGCUGG---------CG-CGCAG- -5'
16019 5' -58 NC_004065.1 + 91190 0.71 0.645819
Target:  5'- --gCGGAAGcGCCGUCGGCgUGCGCGg- -3'
miRNA:   3'- aagGUCUUC-CGGUAGCUG-GCGCGCag -5'
16019 5' -58 NC_004065.1 + 91256 0.67 0.82343
Target:  5'- -aCCuuGAcGCCAUCGACCGCGCc-- -3'
miRNA:   3'- aaGGucUUcCGGUAGCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 94626 0.72 0.54718
Target:  5'- cUCCuGAcgGGGUCGggcgCGGCCgGCGCGUCa -3'
miRNA:   3'- aAGGuCU--UCCGGUa---GCUGG-CGCGCAG- -5'
16019 5' -58 NC_004065.1 + 107178 0.66 0.883784
Target:  5'- -gCCAGAGGGCgGUCGAgaCGgGagcCGUCg -3'
miRNA:   3'- aaGGUCUUCCGgUAGCUg-GCgC---GCAG- -5'
16019 5' -58 NC_004065.1 + 107444 0.71 0.635885
Target:  5'- -aCCAGGAGGUCGUgG-UCGgGCGUCu -3'
miRNA:   3'- aaGGUCUUCCGGUAgCuGGCgCGCAG- -5'
16019 5' -58 NC_004065.1 + 109191 0.67 0.82343
Target:  5'- ---aAGAAGGCCggCGGCgGCGCcUCg -3'
miRNA:   3'- aaggUCUUCCGGuaGCUGgCGCGcAG- -5'
16019 5' -58 NC_004065.1 + 109846 0.7 0.694201
Target:  5'- --gCGGggGGCCAUCGcgcagguGCCGgGCGg- -3'
miRNA:   3'- aagGUCuuCCGGUAGC-------UGGCgCGCag -5'
16019 5' -58 NC_004065.1 + 117378 0.68 0.797915
Target:  5'- aUUCCuc--GGCCAuaucgacgcUCGGCCGCGCG-Cg -3'
miRNA:   3'- -AAGGucuuCCGGU---------AGCUGGCGCGCaG- -5'
16019 5' -58 NC_004065.1 + 119202 0.66 0.890434
Target:  5'- gUCUGGAGGcguGCCGUUGgccuucgcguACCGCaGCGUCa -3'
miRNA:   3'- aAGGUCUUC---CGGUAGC----------UGGCG-CGCAG- -5'
16019 5' -58 NC_004065.1 + 119620 0.68 0.797915
Target:  5'- --gCGGAGGagacGCCGUCGGCCGUgGCGUg -3'
miRNA:   3'- aagGUCUUC----CGGUAGCUGGCG-CGCAg -5'
16019 5' -58 NC_004065.1 + 123634 0.66 0.90309
Target:  5'- cUCCAGGucGGCCGaC-ACCG-GCGUCa -3'
miRNA:   3'- aAGGUCUu-CCGGUaGcUGGCgCGCAG- -5'
16019 5' -58 NC_004065.1 + 126275 0.67 0.831617
Target:  5'- gUCCGG-AGGCCc-CG-CCGCGCGa- -3'
miRNA:   3'- aAGGUCuUCCGGuaGCuGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 127927 0.69 0.724264
Target:  5'- -cUCGGuccGGCCAUCG-CCGCccGCGUCg -3'
miRNA:   3'- aaGGUCuu-CCGGUAGCuGGCG--CGCAG- -5'
16019 5' -58 NC_004065.1 + 128389 0.67 0.847471
Target:  5'- -cCCAGAGGuGCCcggauUCGACC-CGgGUCc -3'
miRNA:   3'- aaGGUCUUC-CGGu----AGCUGGcGCgCAG- -5'
16019 5' -58 NC_004065.1 + 129331 0.66 0.869857
Target:  5'- -aCCAGggGGUCAUCcGAuCCGaGCGg- -3'
miRNA:   3'- aaGGUCuuCCGGUAG-CU-GGCgCGCag -5'
16019 5' -58 NC_004065.1 + 129646 0.67 0.847471
Target:  5'- gUCUGGAAcacagacuGGCCGUCGACCG-GC-UCa -3'
miRNA:   3'- aAGGUCUU--------CCGGUAGCUGGCgCGcAG- -5'
16019 5' -58 NC_004065.1 + 129866 0.66 0.869857
Target:  5'- -gUCAGGAGGUguUCGaccuguGCCGCGCGc- -3'
miRNA:   3'- aaGGUCUUCCGguAGC------UGGCGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.