miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 130457 0.66 0.876226
Target:  5'- -cCCAGAAccugacgcaccacGGCCGUCcGCCGCgGCGa- -3'
miRNA:   3'- aaGGUCUU-------------CCGGUAGcUGGCG-CGCag -5'
16019 5' -58 NC_004065.1 + 130481 0.72 0.544275
Target:  5'- -gCCGGAcGGCaccauggagaugcuCAUCGAgCCGCGCGUCc -3'
miRNA:   3'- aaGGUCUuCCG--------------GUAGCU-GGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 132357 0.66 0.896871
Target:  5'- cUUguGGAGGCgGUagcacgggcaGGCCGuCGCGUCg -3'
miRNA:   3'- aAGguCUUCCGgUAg---------CUGGC-GCGCAG- -5'
16019 5' -58 NC_004065.1 + 135475 0.71 0.616017
Target:  5'- -cCCAGGAGGUCAcCGGCuCGCGCa-- -3'
miRNA:   3'- aaGGUCUUCCGGUaGCUG-GCGCGcag -5'
16019 5' -58 NC_004065.1 + 138947 0.71 0.635885
Target:  5'- cUCCuG-GGGCCAgUCG-CUGCGCGUCu -3'
miRNA:   3'- aAGGuCuUCCGGU-AGCuGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 139004 0.67 0.831617
Target:  5'- cUCgGGAcgguGGCCAUgGACCGCGUc-- -3'
miRNA:   3'- aAGgUCUu---CCGGUAgCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 139478 0.67 0.831617
Target:  5'- gUUCgAGggGGCCGUCGGgCGgGaCGa- -3'
miRNA:   3'- -AAGgUCuuCCGGUAGCUgGCgC-GCag -5'
16019 5' -58 NC_004065.1 + 143217 0.66 0.890434
Target:  5'- gUUCCucAAGGCCGcguUCG-CCGCGCccGUCu -3'
miRNA:   3'- -AAGGucUUCCGGU---AGCuGGCGCG--CAG- -5'
16019 5' -58 NC_004065.1 + 147905 0.66 0.90309
Target:  5'- -gCCGGAuacgucagccGGGCgCAgcuggagaUCGACUGCGaCGUCg -3'
miRNA:   3'- aaGGUCU----------UCCG-GU--------AGCUGGCGC-GCAG- -5'
16019 5' -58 NC_004065.1 + 149705 0.77 0.310567
Target:  5'- -gCCGGggGGCCG-CGGCCGCGCc-- -3'
miRNA:   3'- aaGGUCuuCCGGUaGCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 151252 0.73 0.527915
Target:  5'- gUCCAGGuccuGGCCGcuaaccUCGACUGCGUGaUCa -3'
miRNA:   3'- aAGGUCUu---CCGGU------AGCUGGCGCGC-AG- -5'
16019 5' -58 NC_004065.1 + 152811 0.69 0.752675
Target:  5'- -aUCAGcguGGCCAUCG-CCGUGCGg- -3'
miRNA:   3'- aaGGUCuu-CCGGUAGCuGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 157929 0.7 0.685375
Target:  5'- gUCCAGucuGGCgAUCaGGCCGCGCa-- -3'
miRNA:   3'- aAGGUCuu-CCGgUAG-CUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 158822 0.74 0.453778
Target:  5'- cUUCAGGAGGCuCGUCuucagcaGCUGCGCGUCa -3'
miRNA:   3'- aAGGUCUUCCG-GUAGc------UGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 162585 0.67 0.82343
Target:  5'- -gCCGacAGGuCCGUCGugUGCGgGUCg -3'
miRNA:   3'- aaGGUcuUCC-GGUAGCugGCGCgCAG- -5'
16019 5' -58 NC_004065.1 + 162654 0.71 0.606096
Target:  5'- -cCCAGccuAGGCgugucuagacUCGACCGCGCGUCc -3'
miRNA:   3'- aaGGUCu--UCCGgu--------AGCUGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 162687 0.66 0.896871
Target:  5'- -nCCGGAGcGCCAuUCGACCgGCGgGUa -3'
miRNA:   3'- aaGGUCUUcCGGU-AGCUGG-CGCgCAg -5'
16019 5' -58 NC_004065.1 + 166802 0.66 0.896871
Target:  5'- gUCCGGAcggaugGGGCCGUC-AUCGUGCa-- -3'
miRNA:   3'- aAGGUCU------UCCGGUAGcUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 169257 0.66 0.896871
Target:  5'- --gCGGGAGGCCG-CGGCCcuGUGCGg- -3'
miRNA:   3'- aagGUCUUCCGGUaGCUGG--CGCGCag -5'
16019 5' -58 NC_004065.1 + 170388 0.66 0.90309
Target:  5'- -aCCGGcuGGaCCguGUCGACCGaCGCGgUCa -3'
miRNA:   3'- aaGGUCuuCC-GG--UAGCUGGC-GCGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.