Results 61 - 75 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16019 | 5' | -58 | NC_004065.1 | + | 170483 | 0.66 | 0.876923 |
Target: 5'- cUUCGGggGGUCuUCGGuggaauUgGCGCGUCa -3' miRNA: 3'- aAGGUCuuCCGGuAGCU------GgCGCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 184173 | 0.68 | 0.789117 |
Target: 5'- -gUCGGAGcGGCCAUCGcgucCCGUGCGg- -3' miRNA: 3'- aaGGUCUU-CCGGUAGCu---GGCGCGCag -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 196648 | 0.66 | 0.883784 |
Target: 5'- aUCCAG-GGGCCAguaGCgCGCgGCGUCu -3' miRNA: 3'- aAGGUCuUCCGGUagcUG-GCG-CGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 197514 | 0.66 | 0.876923 |
Target: 5'- cUCC-GAGGGaCC--CGGCCGCGCG-Cg -3' miRNA: 3'- aAGGuCUUCC-GGuaGCUGGCGCGCaG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 198890 | 0.67 | 0.846695 |
Target: 5'- -cCCAGggGGaucaccuucccguCCAgccucUCGAUCGCGCGcCg -3' miRNA: 3'- aaGGUCuuCC-------------GGU-----AGCUGGCGCGCaG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 201005 | 0.68 | 0.815079 |
Target: 5'- -gCCGGucugacucGAGGCCG-CGugCGCGCGg- -3' miRNA: 3'- aaGGUC--------UUCCGGUaGCugGCGCGCag -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 201979 | 0.66 | 0.90309 |
Target: 5'- aUCCGcGAgaacucgucgAGGUCGUUGGCCGCcaacgcgaugGCGUCc -3' miRNA: 3'- aAGGU-CU----------UCCGGUAGCUGGCG----------CGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 202676 | 0.7 | 0.699088 |
Target: 5'- -aCCAGAuGGUCAUCGguAggucgcauggcgguuCCGCGCGUCu -3' miRNA: 3'- aaGGUCUuCCGGUAGC--U---------------GGCGCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 210978 | 0.66 | 0.876923 |
Target: 5'- gUCaCAGAuguGGGCCAcCG-CCGC-CGUCg -3' miRNA: 3'- aAG-GUCU---UCCGGUaGCuGGCGcGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 211325 | 0.66 | 0.869857 |
Target: 5'- gUCCGGAcuuucccaaAGGCCugagcCGACCgaggcggacucGUGCGUCg -3' miRNA: 3'- aAGGUCU---------UCCGGua---GCUGG-----------CGCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 212120 | 0.7 | 0.694201 |
Target: 5'- aUCCAGGAGGCgAcagucucUCGACgG-GCGUCc -3' miRNA: 3'- aAGGUCUUCCGgU-------AGCUGgCgCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 215022 | 0.66 | 0.90309 |
Target: 5'- aUUCCAGAGGGCCGUC-ACC-CaCGa- -3' miRNA: 3'- -AAGGUCUUCCGGUAGcUGGcGcGCag -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 222833 | 0.66 | 0.874825 |
Target: 5'- -gCUAGgcGGCCAcagcucggucgucaUUGACaGCGCGUCc -3' miRNA: 3'- aaGGUCuuCCGGU--------------AGCUGgCGCGCAG- -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 227481 | 0.66 | 0.869857 |
Target: 5'- --aCGGAcGGCCGUCGACCGauCGg- -3' miRNA: 3'- aagGUCUuCCGGUAGCUGGCgcGCag -5' |
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16019 | 5' | -58 | NC_004065.1 | + | 229557 | 0.68 | 0.815079 |
Target: 5'- -gCCcGGAGGCUgacucaggCGAgCGCGCGUCu -3' miRNA: 3'- aaGGuCUUCCGGua------GCUgGCGCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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