miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 229557 0.68 0.815079
Target:  5'- -gCCcGGAGGCUgacucaggCGAgCGCGCGUCu -3'
miRNA:   3'- aaGGuCUUCCGGua------GCUgGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 227481 0.66 0.869857
Target:  5'- --aCGGAcGGCCGUCGACCGauCGg- -3'
miRNA:   3'- aagGUCUuCCGGUAGCUGGCgcGCag -5'
16019 5' -58 NC_004065.1 + 222833 0.66 0.874825
Target:  5'- -gCUAGgcGGCCAcagcucggucgucaUUGACaGCGCGUCc -3'
miRNA:   3'- aaGGUCuuCCGGU--------------AGCUGgCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 215022 0.66 0.90309
Target:  5'- aUUCCAGAGGGCCGUC-ACC-CaCGa- -3'
miRNA:   3'- -AAGGUCUUCCGGUAGcUGGcGcGCag -5'
16019 5' -58 NC_004065.1 + 212120 0.7 0.694201
Target:  5'- aUCCAGGAGGCgAcagucucUCGACgG-GCGUCc -3'
miRNA:   3'- aAGGUCUUCCGgU-------AGCUGgCgCGCAG- -5'
16019 5' -58 NC_004065.1 + 211325 0.66 0.869857
Target:  5'- gUCCGGAcuuucccaaAGGCCugagcCGACCgaggcggacucGUGCGUCg -3'
miRNA:   3'- aAGGUCU---------UCCGGua---GCUGG-----------CGCGCAG- -5'
16019 5' -58 NC_004065.1 + 210978 0.66 0.876923
Target:  5'- gUCaCAGAuguGGGCCAcCG-CCGC-CGUCg -3'
miRNA:   3'- aAG-GUCU---UCCGGUaGCuGGCGcGCAG- -5'
16019 5' -58 NC_004065.1 + 202676 0.7 0.699088
Target:  5'- -aCCAGAuGGUCAUCGguAggucgcauggcgguuCCGCGCGUCu -3'
miRNA:   3'- aaGGUCUuCCGGUAGC--U---------------GGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 201979 0.66 0.90309
Target:  5'- aUCCGcGAgaacucgucgAGGUCGUUGGCCGCcaacgcgaugGCGUCc -3'
miRNA:   3'- aAGGU-CU----------UCCGGUAGCUGGCG----------CGCAG- -5'
16019 5' -58 NC_004065.1 + 201005 0.68 0.815079
Target:  5'- -gCCGGucugacucGAGGCCG-CGugCGCGCGg- -3'
miRNA:   3'- aaGGUC--------UUCCGGUaGCugGCGCGCag -5'
16019 5' -58 NC_004065.1 + 198890 0.67 0.846695
Target:  5'- -cCCAGggGGaucaccuucccguCCAgccucUCGAUCGCGCGcCg -3'
miRNA:   3'- aaGGUCuuCC-------------GGU-----AGCUGGCGCGCaG- -5'
16019 5' -58 NC_004065.1 + 197514 0.66 0.876923
Target:  5'- cUCC-GAGGGaCC--CGGCCGCGCG-Cg -3'
miRNA:   3'- aAGGuCUUCC-GGuaGCUGGCGCGCaG- -5'
16019 5' -58 NC_004065.1 + 196648 0.66 0.883784
Target:  5'- aUCCAG-GGGCCAguaGCgCGCgGCGUCu -3'
miRNA:   3'- aAGGUCuUCCGGUagcUG-GCG-CGCAG- -5'
16019 5' -58 NC_004065.1 + 184173 0.68 0.789117
Target:  5'- -gUCGGAGcGGCCAUCGcgucCCGUGCGg- -3'
miRNA:   3'- aaGGUCUU-CCGGUAGCu---GGCGCGCag -5'
16019 5' -58 NC_004065.1 + 170483 0.66 0.876923
Target:  5'- cUUCGGggGGUCuUCGGuggaauUgGCGCGUCa -3'
miRNA:   3'- aAGGUCuuCCGGuAGCU------GgCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 170388 0.66 0.90309
Target:  5'- -aCCGGcuGGaCCguGUCGACCGaCGCGgUCa -3'
miRNA:   3'- aaGGUCuuCC-GG--UAGCUGGC-GCGC-AG- -5'
16019 5' -58 NC_004065.1 + 169257 0.66 0.896871
Target:  5'- --gCGGGAGGCCG-CGGCCcuGUGCGg- -3'
miRNA:   3'- aagGUCUUCCGGUaGCUGG--CGCGCag -5'
16019 5' -58 NC_004065.1 + 166802 0.66 0.896871
Target:  5'- gUCCGGAcggaugGGGCCGUC-AUCGUGCa-- -3'
miRNA:   3'- aAGGUCU------UCCGGUAGcUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 162687 0.66 0.896871
Target:  5'- -nCCGGAGcGCCAuUCGACCgGCGgGUa -3'
miRNA:   3'- aaGGUCUUcCGGU-AGCUGG-CGCgCAg -5'
16019 5' -58 NC_004065.1 + 162654 0.71 0.606096
Target:  5'- -cCCAGccuAGGCgugucuagacUCGACCGCGCGUCc -3'
miRNA:   3'- aaGGUCu--UCCGgu--------AGCUGGCGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.