miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 64284 0.68 0.789117
Target:  5'- gUUCCuGGAAGGCg--CGG-CGCGCGUCu -3'
miRNA:   3'- -AAGG-UCUUCCGguaGCUgGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 60902 0.67 0.855125
Target:  5'- cUCgGGAAcugcuGGCCG-CGGCC-CGCGUCu -3'
miRNA:   3'- aAGgUCUU-----CCGGUaGCUGGcGCGCAG- -5'
16019 5' -58 NC_004065.1 + 56909 0.68 0.797915
Target:  5'- aUCCuc--GGCUgcgGUCGgaACCGCGCGUCg -3'
miRNA:   3'- aAGGucuuCCGG---UAGC--UGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 37887 0.71 0.625949
Target:  5'- --gCGGAAGGCCGUCuGGCgGC-CGUCg -3'
miRNA:   3'- aagGUCUUCCGGUAG-CUGgCGcGCAG- -5'
16019 5' -58 NC_004065.1 + 33152 0.67 0.862589
Target:  5'- --gCAGggGgauGCCGUUGACgCGCGCGa- -3'
miRNA:   3'- aagGUCuuC---CGGUAGCUG-GCGCGCag -5'
16019 5' -58 NC_004065.1 + 31898 0.66 0.90309
Target:  5'- cUCgAGAgcGGGCCugaCG-CgGCGCGUCg -3'
miRNA:   3'- aAGgUCU--UCCGGua-GCuGgCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 31290 0.67 0.862589
Target:  5'- ---gAGGAGGaCGUCGGCgGCGuCGUCg -3'
miRNA:   3'- aaggUCUUCCgGUAGCUGgCGC-GCAG- -5'
16019 5' -58 NC_004065.1 + 28135 0.67 0.847471
Target:  5'- gUCUGGGAcGCCAUCGGCCucuGCGUGa- -3'
miRNA:   3'- aAGGUCUUcCGGUAGCUGG---CGCGCag -5'
16019 5' -58 NC_004065.1 + 26900 0.74 0.462747
Target:  5'- gUCCAG-AGGCCGcUCGACCGCaCGcCg -3'
miRNA:   3'- aAGGUCuUCCGGU-AGCUGGCGcGCaG- -5'
16019 5' -58 NC_004065.1 + 24914 0.68 0.797915
Target:  5'- cUUCCGGAGGcGCCAUaucgagCGAUCGacaGCGUUu -3'
miRNA:   3'- -AAGGUCUUC-CGGUA------GCUGGCg--CGCAG- -5'
16019 5' -58 NC_004065.1 + 17961 0.67 0.82343
Target:  5'- -gCCGGAcGGUCGUCcgucuGCCGCGCGa- -3'
miRNA:   3'- aaGGUCUuCCGGUAGc----UGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 7855 0.7 0.704935
Target:  5'- -gCCauGGAGGGCCGcaacgaacgcuUCG-UCGCGCGUCg -3'
miRNA:   3'- aaGG--UCUUCCGGU-----------AGCuGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 4489 0.68 0.789117
Target:  5'- -gCCAuuGAGGGCCAgCaGCUGCGCGUg -3'
miRNA:   3'- aaGGU--CUUCCGGUaGcUGGCGCGCAg -5'
16019 5' -58 NC_004065.1 + 4280 0.66 0.869857
Target:  5'- -gCUGGggGuaGCCA-CGACgGCGUGUCg -3'
miRNA:   3'- aaGGUCuuC--CGGUaGCUGgCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 1005 0.66 0.876923
Target:  5'- cUgCGGGAGGCCGagugcgcgaucUCGcuCCGCGCGcUCc -3'
miRNA:   3'- aAgGUCUUCCGGU-----------AGCu-GGCGCGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.