miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 139004 0.67 0.831617
Target:  5'- cUCgGGAcgguGGCCAUgGACCGCGUc-- -3'
miRNA:   3'- aAGgUCUu---CCGGUAgCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 64284 0.68 0.789117
Target:  5'- gUUCCuGGAAGGCg--CGG-CGCGCGUCu -3'
miRNA:   3'- -AAGG-UCUUCCGguaGCUgGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 24914 0.68 0.797915
Target:  5'- cUUCCGGAGGcGCCAUaucgagCGAUCGacaGCGUUu -3'
miRNA:   3'- -AAGGUCUUC-CGGUA------GCUGGCg--CGCAG- -5'
16019 5' -58 NC_004065.1 + 117378 0.68 0.797915
Target:  5'- aUUCCuc--GGCCAuaucgacgcUCGGCCGCGCG-Cg -3'
miRNA:   3'- -AAGGucuuCCGGU---------AGCUGGCGCGCaG- -5'
16019 5' -58 NC_004065.1 + 56909 0.68 0.797915
Target:  5'- aUCCuc--GGCUgcgGUCGgaACCGCGCGUCg -3'
miRNA:   3'- aAGGucuuCCGG---UAGC--UGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 201005 0.68 0.815079
Target:  5'- -gCCGGucugacucGAGGCCG-CGugCGCGCGg- -3'
miRNA:   3'- aaGGUC--------UUCCGGUaGCugGCGCGCag -5'
16019 5' -58 NC_004065.1 + 17961 0.67 0.82343
Target:  5'- -gCCGGAcGGUCGUCcgucuGCCGCGCGa- -3'
miRNA:   3'- aaGGUCUuCCGGUAGc----UGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 109191 0.67 0.82343
Target:  5'- ---aAGAAGGCCggCGGCgGCGCcUCg -3'
miRNA:   3'- aaggUCUUCCGGuaGCUGgCGCGcAG- -5'
16019 5' -58 NC_004065.1 + 91256 0.67 0.82343
Target:  5'- -aCCuuGAcGCCAUCGACCGCGCc-- -3'
miRNA:   3'- aaGGucUUcCGGUAGCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 127927 0.69 0.724264
Target:  5'- -cUCGGuccGGCCAUCG-CCGCccGCGUCg -3'
miRNA:   3'- aaGGUCuu-CCGGUAGCuGGCG--CGCAG- -5'
16019 5' -58 NC_004065.1 + 202676 0.7 0.699088
Target:  5'- -aCCAGAuGGUCAUCGguAggucgcauggcgguuCCGCGCGUCu -3'
miRNA:   3'- aaGGUCUuCCGGUAGC--U---------------GGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 109846 0.7 0.694201
Target:  5'- --gCGGggGGCCAUCGcgcagguGCCGgGCGg- -3'
miRNA:   3'- aagGUCuuCCGGUAGC-------UGGCgCGCag -5'
16019 5' -58 NC_004065.1 + 149705 0.77 0.310567
Target:  5'- -gCCGGggGGCCG-CGGCCGCGCc-- -3'
miRNA:   3'- aaGGUCuuCCGGUaGCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 26900 0.74 0.462747
Target:  5'- gUCCAG-AGGCCGcUCGACCGCaCGcCg -3'
miRNA:   3'- aAGGUCuUCCGGU-AGCUGGCGcGCaG- -5'
16019 5' -58 NC_004065.1 + 151252 0.73 0.527915
Target:  5'- gUCCAGGuccuGGCCGcuaaccUCGACUGCGUGaUCa -3'
miRNA:   3'- aAGGUCUu---CCGGU------AGCUGGCGCGC-AG- -5'
16019 5' -58 NC_004065.1 + 130481 0.72 0.544275
Target:  5'- -gCCGGAcGGCaccauggagaugcuCAUCGAgCCGCGCGUCc -3'
miRNA:   3'- aaGGUCUuCCG--------------GUAGCU-GGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 162654 0.71 0.606096
Target:  5'- -cCCAGccuAGGCgugucuagacUCGACCGCGCGUCc -3'
miRNA:   3'- aaGGUCu--UCCGgu--------AGCUGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 135475 0.71 0.616017
Target:  5'- -cCCAGGAGGUCAcCGGCuCGCGCa-- -3'
miRNA:   3'- aaGGUCUUCCGGUaGCUG-GCGCGcag -5'
16019 5' -58 NC_004065.1 + 107444 0.71 0.635885
Target:  5'- -aCCAGGAGGUCGUgG-UCGgGCGUCu -3'
miRNA:   3'- aaGGUCUUCCGGUAgCuGGCgCGCAG- -5'
16019 5' -58 NC_004065.1 + 91190 0.71 0.645819
Target:  5'- --gCGGAAGcGCCGUCGGCgUGCGCGg- -3'
miRNA:   3'- aagGUCUUC-CGGUAGCUG-GCGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.