miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 64284 0.68 0.789117
Target:  5'- gUUCCuGGAAGGCg--CGG-CGCGCGUCu -3'
miRNA:   3'- -AAGG-UCUUCCGguaGCUgGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 127927 0.69 0.724264
Target:  5'- -cUCGGuccGGCCAUCG-CCGCccGCGUCg -3'
miRNA:   3'- aaGGUCuu-CCGGUAGCuGGCG--CGCAG- -5'
16019 5' -58 NC_004065.1 + 87262 0.68 0.780186
Target:  5'- -aCCAGcAGGCCGUCG-UCGuCGCGg- -3'
miRNA:   3'- aaGGUCuUCCGGUAGCuGGC-GCGCag -5'
16019 5' -58 NC_004065.1 + 4489 0.68 0.789117
Target:  5'- -gCCAuuGAGGGCCAgCaGCUGCGCGUg -3'
miRNA:   3'- aaGGU--CUUCCGGUaGcUGGCGCGCAg -5'
16019 5' -58 NC_004065.1 + 184173 0.68 0.789117
Target:  5'- -gUCGGAGcGGCCAUCGcgucCCGUGCGg- -3'
miRNA:   3'- aaGGUCUU-CCGGUAGCu---GGCGCGCag -5'
16019 5' -58 NC_004065.1 + 119620 0.68 0.797915
Target:  5'- --gCGGAGGagacGCCGUCGGCCGUgGCGUg -3'
miRNA:   3'- aagGUCUUC----CGGUAGCUGGCG-CGCAg -5'
16019 5' -58 NC_004065.1 + 229557 0.68 0.815079
Target:  5'- -gCCcGGAGGCUgacucaggCGAgCGCGCGUCu -3'
miRNA:   3'- aaGGuCUUCCGGua------GCUgGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 162585 0.67 0.82343
Target:  5'- -gCCGacAGGuCCGUCGugUGCGgGUCg -3'
miRNA:   3'- aaGGUcuUCC-GGUAGCugGCGCgCAG- -5'
16019 5' -58 NC_004065.1 + 139478 0.67 0.831617
Target:  5'- gUUCgAGggGGCCGUCGGgCGgGaCGa- -3'
miRNA:   3'- -AAGgUCuuCCGGUAGCUgGCgC-GCag -5'
16019 5' -58 NC_004065.1 + 126275 0.67 0.831617
Target:  5'- gUCCGG-AGGCCc-CG-CCGCGCGa- -3'
miRNA:   3'- aAGGUCuUCCGGuaGCuGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 152811 0.69 0.752675
Target:  5'- -aUCAGcguGGCCAUCG-CCGUGCGg- -3'
miRNA:   3'- aaGGUCuu-CCGGUAGCuGGCGCGCag -5'
16019 5' -58 NC_004065.1 + 75122 0.69 0.743293
Target:  5'- aUCCGGc-GGCU-UCGAUCGCGCGaUCg -3'
miRNA:   3'- aAGGUCuuCCGGuAGCUGGCGCGC-AG- -5'
16019 5' -58 NC_004065.1 + 31898 0.66 0.90309
Target:  5'- cUCgAGAgcGGGCCugaCG-CgGCGCGUCg -3'
miRNA:   3'- aAGgUCU--UCCGGua-GCuGgCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 94626 0.72 0.54718
Target:  5'- cUCCuGAcgGGGUCGggcgCGGCCgGCGCGUCa -3'
miRNA:   3'- aAGGuCU--UCCGGUa---GCUGG-CGCGCAG- -5'
16019 5' -58 NC_004065.1 + 37887 0.71 0.625949
Target:  5'- --gCGGAAGGCCGUCuGGCgGC-CGUCg -3'
miRNA:   3'- aagGUCUUCCGGUAG-CUGgCGcGCAG- -5'
16019 5' -58 NC_004065.1 + 138947 0.71 0.635885
Target:  5'- cUCCuG-GGGCCAgUCG-CUGCGCGUCu -3'
miRNA:   3'- aAGGuCuUCCGGU-AGCuGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 80312 0.7 0.665648
Target:  5'- gUCC-GAGGGCCGgcgCGGCCGCggccccccgGCGUUc -3'
miRNA:   3'- aAGGuCUUCCGGUa--GCUGGCG---------CGCAG- -5'
16019 5' -58 NC_004065.1 + 157929 0.7 0.685375
Target:  5'- gUCCAGucuGGCgAUCaGGCCGCGCa-- -3'
miRNA:   3'- aAGGUCuu-CCGgUAG-CUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 212120 0.7 0.694201
Target:  5'- aUCCAGGAGGCgAcagucucUCGACgG-GCGUCc -3'
miRNA:   3'- aAGGUCUUCCGgU-------AGCUGgCgCGCAG- -5'
16019 5' -58 NC_004065.1 + 7855 0.7 0.704935
Target:  5'- -gCCauGGAGGGCCGcaacgaacgcuUCG-UCGCGCGUCg -3'
miRNA:   3'- aaGG--UCUUCCGGU-----------AGCuGGCGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.