miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 135475 0.71 0.616017
Target:  5'- -cCCAGGAGGUCAcCGGCuCGCGCa-- -3'
miRNA:   3'- aaGGUCUUCCGGUaGCUG-GCGCGcag -5'
16019 5' -58 NC_004065.1 + 162654 0.71 0.606096
Target:  5'- -cCCAGccuAGGCgugucuagacUCGACCGCGCGUCc -3'
miRNA:   3'- aaGGUCu--UCCGgu--------AGCUGGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 130481 0.72 0.544275
Target:  5'- -gCCGGAcGGCaccauggagaugcuCAUCGAgCCGCGCGUCc -3'
miRNA:   3'- aaGGUCUuCCG--------------GUAGCU-GGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 227481 0.66 0.869857
Target:  5'- --aCGGAcGGCCGUCGACCGauCGg- -3'
miRNA:   3'- aagGUCUuCCGGUAGCUGGCgcGCag -5'
16019 5' -58 NC_004065.1 + 26900 0.74 0.462747
Target:  5'- gUCCAG-AGGCCGcUCGACCGCaCGcCg -3'
miRNA:   3'- aAGGUCuUCCGGU-AGCUGGCGcGCaG- -5'
16019 5' -58 NC_004065.1 + 211325 0.66 0.869857
Target:  5'- gUCCGGAcuuucccaaAGGCCugagcCGACCgaggcggacucGUGCGUCg -3'
miRNA:   3'- aAGGUCU---------UCCGGua---GCUGG-----------CGCGCAG- -5'
16019 5' -58 NC_004065.1 + 64284 0.68 0.789117
Target:  5'- gUUCCuGGAAGGCg--CGG-CGCGCGUCu -3'
miRNA:   3'- -AAGG-UCUUCCGguaGCUgGCGCGCAG- -5'
16019 5' -58 NC_004065.1 + 24914 0.68 0.797915
Target:  5'- cUUCCGGAGGcGCCAUaucgagCGAUCGacaGCGUUu -3'
miRNA:   3'- -AAGGUCUUC-CGGUA------GCUGGCg--CGCAG- -5'
16019 5' -58 NC_004065.1 + 139004 0.67 0.831617
Target:  5'- cUCgGGAcgguGGCCAUgGACCGCGUc-- -3'
miRNA:   3'- aAGgUCUu---CCGGUAgCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 91256 0.67 0.82343
Target:  5'- -aCCuuGAcGCCAUCGACCGCGCc-- -3'
miRNA:   3'- aaGGucUUcCGGUAGCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 109191 0.67 0.82343
Target:  5'- ---aAGAAGGCCggCGGCgGCGCcUCg -3'
miRNA:   3'- aaggUCUUCCGGuaGCUGgCGCGcAG- -5'
16019 5' -58 NC_004065.1 + 132357 0.66 0.896871
Target:  5'- cUUguGGAGGCgGUagcacgggcaGGCCGuCGCGUCg -3'
miRNA:   3'- aAGguCUUCCGgUAg---------CUGGC-GCGCAG- -5'
16019 5' -58 NC_004065.1 + 162687 0.66 0.896871
Target:  5'- -nCCGGAGcGCCAuUCGACCgGCGgGUa -3'
miRNA:   3'- aaGGUCUUcCGGU-AGCUGG-CGCgCAg -5'
16019 5' -58 NC_004065.1 + 215022 0.66 0.90309
Target:  5'- aUUCCAGAGGGCCGUC-ACC-CaCGa- -3'
miRNA:   3'- -AAGGUCUUCCGGUAGcUGGcGcGCag -5'
16019 5' -58 NC_004065.1 + 123634 0.66 0.90309
Target:  5'- cUCCAGGucGGCCGaC-ACCG-GCGUCa -3'
miRNA:   3'- aAGGUCUu-CCGGUaGcUGGCgCGCAG- -5'
16019 5' -58 NC_004065.1 + 201979 0.66 0.90309
Target:  5'- aUCCGcGAgaacucgucgAGGUCGUUGGCCGCcaacgcgaugGCGUCc -3'
miRNA:   3'- aAGGU-CU----------UCCGGUAGCUGGCG----------CGCAG- -5'
16019 5' -58 NC_004065.1 + 129646 0.67 0.847471
Target:  5'- gUCUGGAAcacagacuGGCCGUCGACCG-GC-UCa -3'
miRNA:   3'- aAGGUCUU--------CCGGUAGCUGGCgCGcAG- -5'
16019 5' -58 NC_004065.1 + 31290 0.67 0.862589
Target:  5'- ---gAGGAGGaCGUCGGCgGCGuCGUCg -3'
miRNA:   3'- aaggUCUUCCgGUAGCUGgCGC-GCAG- -5'
16019 5' -58 NC_004065.1 + 33152 0.67 0.862589
Target:  5'- --gCAGggGgauGCCGUUGACgCGCGCGa- -3'
miRNA:   3'- aagGUCuuC---CGGUAGCUG-GCGCGCag -5'
16019 5' -58 NC_004065.1 + 117378 0.68 0.797915
Target:  5'- aUUCCuc--GGCCAuaucgacgcUCGGCCGCGCG-Cg -3'
miRNA:   3'- -AAGGucuuCCGGU---------AGCUGGCGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.