miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16019 5' -58 NC_004065.1 + 119202 0.66 0.890434
Target:  5'- gUCUGGAGGcguGCCGUUGgccuucgcguACCGCaGCGUCa -3'
miRNA:   3'- aAGGUCUUC---CGGUAGC----------UGGCG-CGCAG- -5'
16019 5' -58 NC_004065.1 + 89740 0.66 0.890434
Target:  5'- -gUCAGggGGUUGUCGACCacguacgacGCgGCGUUg -3'
miRNA:   3'- aaGGUCuuCCGGUAGCUGG---------CG-CGCAG- -5'
16019 5' -58 NC_004065.1 + 196648 0.66 0.883784
Target:  5'- aUCCAG-GGGCCAguaGCgCGCgGCGUCu -3'
miRNA:   3'- aAGGUCuUCCGGUagcUG-GCG-CGCAG- -5'
16019 5' -58 NC_004065.1 + 107178 0.66 0.883784
Target:  5'- -gCCAGAGGGCgGUCGAgaCGgGagcCGUCg -3'
miRNA:   3'- aaGGUCUUCCGgUAGCUg-GCgC---GCAG- -5'
16019 5' -58 NC_004065.1 + 74993 0.66 0.879692
Target:  5'- -gUCGGuGAGGCCcugguagcuggcguuGUCGACCaGgGCGUCg -3'
miRNA:   3'- aaGGUC-UUCCGG---------------UAGCUGG-CgCGCAG- -5'
16019 5' -58 NC_004065.1 + 197514 0.66 0.876923
Target:  5'- cUCC-GAGGGaCC--CGGCCGCGCG-Cg -3'
miRNA:   3'- aAGGuCUUCC-GGuaGCUGGCGCGCaG- -5'
16019 5' -58 NC_004065.1 + 227481 0.66 0.869857
Target:  5'- --aCGGAcGGCCGUCGACCGauCGg- -3'
miRNA:   3'- aagGUCUuCCGGUAGCUGGCgcGCag -5'
16019 5' -58 NC_004065.1 + 211325 0.66 0.869857
Target:  5'- gUCCGGAcuuucccaaAGGCCugagcCGACCgaggcggacucGUGCGUCg -3'
miRNA:   3'- aAGGUCU---------UCCGGua---GCUGG-----------CGCGCAG- -5'
16019 5' -58 NC_004065.1 + 129331 0.66 0.869857
Target:  5'- -aCCAGggGGUCAUCcGAuCCGaGCGg- -3'
miRNA:   3'- aaGGUCuuCCGGUAG-CU-GGCgCGCag -5'
16019 5' -58 NC_004065.1 + 33152 0.67 0.862589
Target:  5'- --gCAGggGgauGCCGUUGACgCGCGCGa- -3'
miRNA:   3'- aagGUCuuC---CGGUAGCUG-GCGCGCag -5'
16019 5' -58 NC_004065.1 + 31290 0.67 0.862589
Target:  5'- ---gAGGAGGaCGUCGGCgGCGuCGUCg -3'
miRNA:   3'- aaggUCUUCCgGUAGCUGgCGC-GCAG- -5'
16019 5' -58 NC_004065.1 + 129646 0.67 0.847471
Target:  5'- gUCUGGAAcacagacuGGCCGUCGACCG-GC-UCa -3'
miRNA:   3'- aAGGUCUU--------CCGGUAGCUGGCgCGcAG- -5'
16019 5' -58 NC_004065.1 + 198890 0.67 0.846695
Target:  5'- -cCCAGggGGaucaccuucccguCCAgccucUCGAUCGCGCGcCg -3'
miRNA:   3'- aaGGUCuuCC-------------GGU-----AGCUGGCGCGCaG- -5'
16019 5' -58 NC_004065.1 + 139004 0.67 0.831617
Target:  5'- cUCgGGAcgguGGCCAUgGACCGCGUc-- -3'
miRNA:   3'- aAGgUCUu---CCGGUAgCUGGCGCGcag -5'
16019 5' -58 NC_004065.1 + 64632 1.06 0.004304
Target:  5'- cUUCCAGAAGGCCAUCGACCGCGCGUCc -3'
miRNA:   3'- -AAGGUCUUCCGGUAGCUGGCGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.