Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1602 | 3' | -53.6 | NC_001347.2 | + | 161542 | 1.12 | 0.004175 |
Target: 5'- aCCCAAGCGCUGCAACAGUUCCUGCACu -3' miRNA: 3'- -GGGUUCGCGACGUUGUCAAGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 174547 | 0.77 | 0.513966 |
Target: 5'- aCCUuccuGUGCUGCGACaAGUUCCUGCu- -3' miRNA: 3'- -GGGuu--CGCGACGUUG-UCAAGGACGug -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 139682 | 0.77 | 0.513966 |
Target: 5'- ---cGGCGUUGCGGCAGUUUgUGCACg -3' miRNA: 3'- ggguUCGCGACGUUGUCAAGgACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 201562 | 0.76 | 0.614441 |
Target: 5'- cCCCGAGcCGCUGCGuuucgucgGCAGcaUCUGCACu -3' miRNA: 3'- -GGGUUC-GCGACGU--------UGUCaaGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 192644 | 0.75 | 0.624675 |
Target: 5'- gUgGAGaCGCUGCGuCGGUUUCUGCGCg -3' miRNA: 3'- gGgUUC-GCGACGUuGUCAAGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 38915 | 0.74 | 0.696022 |
Target: 5'- aCCCGgcgccAGCGCcaGguACAGUccgUCCUGCGCg -3' miRNA: 3'- -GGGU-----UCGCGa-CguUGUCA---AGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 16020 | 0.73 | 0.763775 |
Target: 5'- aCCAGGUGCUGUcgcucGGCauuccgcacaacuGGUUCCUGCAg -3' miRNA: 3'- gGGUUCGCGACG-----UUG-------------UCAAGGACGUg -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 196914 | 0.72 | 0.801593 |
Target: 5'- aUCAAGCGCgaGCuGCuGUgCCUGCACg -3' miRNA: 3'- gGGUUCGCGa-CGuUGuCAaGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 88598 | 0.71 | 0.844169 |
Target: 5'- gCCUggGCGaccugaGCGGCGGcggCCUGCGCg -3' miRNA: 3'- -GGGuuCGCga----CGUUGUCaa-GGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 26053 | 0.71 | 0.857594 |
Target: 5'- gCCGGGCGCUGCGgucccgacauggagACAGUUUCcacGCAg -3' miRNA: 3'- gGGUUCGCGACGU--------------UGUCAAGGa--CGUg -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 53237 | 0.7 | 0.895538 |
Target: 5'- uCCCGAGUGUcGCAACgAGacCCUGUAUc -3' miRNA: 3'- -GGGUUCGCGaCGUUG-UCaaGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 39155 | 0.7 | 0.895538 |
Target: 5'- gCCCGcgucGCGCUGCGACca--CUUGCGCa -3' miRNA: 3'- -GGGUu---CGCGACGUUGucaaGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 117548 | 0.7 | 0.901991 |
Target: 5'- uUCCaAAGCGUUgaccacgccgaGCAGCAGcUCCUGCGa -3' miRNA: 3'- -GGG-UUCGCGA-----------CGUUGUCaAGGACGUg -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 83923 | 0.69 | 0.919942 |
Target: 5'- aCCAGGCGCUgGCcACAGccUCCgGCGa -3' miRNA: 3'- gGGUUCGCGA-CGuUGUCa-AGGaCGUg -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 152226 | 0.69 | 0.935747 |
Target: 5'- -aCAuGGUGCUGCcGCGGcgCUUGCACu -3' miRNA: 3'- ggGU-UCGCGACGuUGUCaaGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 164023 | 0.69 | 0.92545 |
Target: 5'- gCCCAGGCGa---AAgAGUUCCUGCu- -3' miRNA: 3'- -GGGUUCGCgacgUUgUCAAGGACGug -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 178384 | 0.69 | 0.914196 |
Target: 5'- uUCCuGGCGCccaGCAuggcGCAGUUCUgGCACg -3' miRNA: 3'- -GGGuUCGCGa--CGU----UGUCAAGGaCGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 77851 | 0.69 | 0.908211 |
Target: 5'- aCCuGGCGCUGCugcuGCAGguggCCgaGCGCc -3' miRNA: 3'- gGGuUCGCGACGu---UGUCaa--GGa-CGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 180630 | 0.69 | 0.930718 |
Target: 5'- aCCAGGUgcuacgucuGCUGuCAGgAGUaCCUGCACc -3' miRNA: 3'- gGGUUCG---------CGAC-GUUgUCAaGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 89045 | 0.69 | 0.935747 |
Target: 5'- gUCGGGCGCguUGCAACucUUgCUGCACg -3' miRNA: 3'- gGGUUCGCG--ACGUUGucAAgGACGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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