miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 3' -53.6 NC_001347.2 + 161542 1.12 0.004175
Target:  5'- aCCCAAGCGCUGCAACAGUUCCUGCACu -3'
miRNA:   3'- -GGGUUCGCGACGUUGUCAAGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 139682 0.77 0.513966
Target:  5'- ---cGGCGUUGCGGCAGUUUgUGCACg -3'
miRNA:   3'- ggguUCGCGACGUUGUCAAGgACGUG- -5'
1602 3' -53.6 NC_001347.2 + 174547 0.77 0.513966
Target:  5'- aCCUuccuGUGCUGCGACaAGUUCCUGCu- -3'
miRNA:   3'- -GGGuu--CGCGACGUUG-UCAAGGACGug -5'
1602 3' -53.6 NC_001347.2 + 201562 0.76 0.614441
Target:  5'- cCCCGAGcCGCUGCGuuucgucgGCAGcaUCUGCACu -3'
miRNA:   3'- -GGGUUC-GCGACGU--------UGUCaaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 192644 0.75 0.624675
Target:  5'- gUgGAGaCGCUGCGuCGGUUUCUGCGCg -3'
miRNA:   3'- gGgUUC-GCGACGUuGUCAAGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 38915 0.74 0.696022
Target:  5'- aCCCGgcgccAGCGCcaGguACAGUccgUCCUGCGCg -3'
miRNA:   3'- -GGGU-----UCGCGa-CguUGUCA---AGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 16020 0.73 0.763775
Target:  5'- aCCAGGUGCUGUcgcucGGCauuccgcacaacuGGUUCCUGCAg -3'
miRNA:   3'- gGGUUCGCGACG-----UUG-------------UCAAGGACGUg -5'
1602 3' -53.6 NC_001347.2 + 196914 0.72 0.801593
Target:  5'- aUCAAGCGCgaGCuGCuGUgCCUGCACg -3'
miRNA:   3'- gGGUUCGCGa-CGuUGuCAaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 88598 0.71 0.844169
Target:  5'- gCCUggGCGaccugaGCGGCGGcggCCUGCGCg -3'
miRNA:   3'- -GGGuuCGCga----CGUUGUCaa-GGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 26053 0.71 0.857594
Target:  5'- gCCGGGCGCUGCGgucccgacauggagACAGUUUCcacGCAg -3'
miRNA:   3'- gGGUUCGCGACGU--------------UGUCAAGGa--CGUg -5'
1602 3' -53.6 NC_001347.2 + 39155 0.7 0.895538
Target:  5'- gCCCGcgucGCGCUGCGACca--CUUGCGCa -3'
miRNA:   3'- -GGGUu---CGCGACGUUGucaaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 53237 0.7 0.895538
Target:  5'- uCCCGAGUGUcGCAACgAGacCCUGUAUc -3'
miRNA:   3'- -GGGUUCGCGaCGUUG-UCaaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 117548 0.7 0.901991
Target:  5'- uUCCaAAGCGUUgaccacgccgaGCAGCAGcUCCUGCGa -3'
miRNA:   3'- -GGG-UUCGCGA-----------CGUUGUCaAGGACGUg -5'
1602 3' -53.6 NC_001347.2 + 77851 0.69 0.908211
Target:  5'- aCCuGGCGCUGCugcuGCAGguggCCgaGCGCc -3'
miRNA:   3'- gGGuUCGCGACGu---UGUCaa--GGa-CGUG- -5'
1602 3' -53.6 NC_001347.2 + 178384 0.69 0.914196
Target:  5'- uUCCuGGCGCccaGCAuggcGCAGUUCUgGCACg -3'
miRNA:   3'- -GGGuUCGCGa--CGU----UGUCAAGGaCGUG- -5'
1602 3' -53.6 NC_001347.2 + 83923 0.69 0.919942
Target:  5'- aCCAGGCGCUgGCcACAGccUCCgGCGa -3'
miRNA:   3'- gGGUUCGCGA-CGuUGUCa-AGGaCGUg -5'
1602 3' -53.6 NC_001347.2 + 164023 0.69 0.92545
Target:  5'- gCCCAGGCGa---AAgAGUUCCUGCu- -3'
miRNA:   3'- -GGGUUCGCgacgUUgUCAAGGACGug -5'
1602 3' -53.6 NC_001347.2 + 180630 0.69 0.930718
Target:  5'- aCCAGGUgcuacgucuGCUGuCAGgAGUaCCUGCACc -3'
miRNA:   3'- gGGUUCG---------CGAC-GUUgUCAaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 89045 0.69 0.935747
Target:  5'- gUCGGGCGCguUGCAACucUUgCUGCACg -3'
miRNA:   3'- gGGUUCGCG--ACGUUGucAAgGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 152226 0.69 0.935747
Target:  5'- -aCAuGGUGCUGCcGCGGcgCUUGCACu -3'
miRNA:   3'- ggGU-UCGCGACGuUGUCaaGGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.