miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 3' -53.6 NC_001347.2 + 1665 0.67 0.967602
Target:  5'- cCUCAgccGGCGCUcCGACAgacGUUgCUGCGCg -3'
miRNA:   3'- -GGGU---UCGCGAcGUUGU---CAAgGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 2319 0.66 0.98451
Target:  5'- aCCCGcuggcGGCGgaGCugucGCAcUUUCUGCGCg -3'
miRNA:   3'- -GGGU-----UCGCgaCGu---UGUcAAGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 4885 0.66 0.98451
Target:  5'- cCCCgAGGCGCUGCucugaAGCcaAGUgCCgacgGCGCu -3'
miRNA:   3'- -GGG-UUCGCGACG-----UUG--UCAaGGa---CGUG- -5'
1602 3' -53.6 NC_001347.2 + 15381 0.66 0.98451
Target:  5'- aCgCGAGCGCgaGCGGCGuaUUCUGCAg -3'
miRNA:   3'- -GgGUUCGCGa-CGUUGUcaAGGACGUg -5'
1602 3' -53.6 NC_001347.2 + 16020 0.73 0.763775
Target:  5'- aCCAGGUGCUGUcgcucGGCauuccgcacaacuGGUUCCUGCAg -3'
miRNA:   3'- gGGUUCGCGACG-----UUG-------------UCAAGGACGUg -5'
1602 3' -53.6 NC_001347.2 + 26053 0.71 0.857594
Target:  5'- gCCGGGCGCUGCGgucccgacauggagACAGUUUCcacGCAg -3'
miRNA:   3'- gGGUUCGCGACGU--------------UGUCAAGGa--CGUg -5'
1602 3' -53.6 NC_001347.2 + 28165 0.67 0.970591
Target:  5'- aCCguGGCGC-GUGACGGcccccuaCCUGCGCg -3'
miRNA:   3'- -GGguUCGCGaCGUUGUCaa-----GGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 38793 0.66 0.986229
Target:  5'- gCCC-AGCcgGUUGCAGCGGUacagCC-GCACc -3'
miRNA:   3'- -GGGuUCG--CGACGUUGUCAa---GGaCGUG- -5'
1602 3' -53.6 NC_001347.2 + 38915 0.74 0.696022
Target:  5'- aCCCGgcgccAGCGCcaGguACAGUccgUCCUGCGCg -3'
miRNA:   3'- -GGGU-----UCGCGa-CguUGUCA---AGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 39155 0.7 0.895538
Target:  5'- gCCCGcgucGCGCUGCGACca--CUUGCGCa -3'
miRNA:   3'- -GGGUu---CGCGACGUUGucaaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 53237 0.7 0.895538
Target:  5'- uCCCGAGUGUcGCAACgAGacCCUGUAUc -3'
miRNA:   3'- -GGGUUCGCGaCGUUG-UCaaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 77432 0.68 0.945092
Target:  5'- aCCAGGUGCUGCGcgacccguGCG--UgCUGCGCa -3'
miRNA:   3'- gGGUUCGCGACGU--------UGUcaAgGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 77851 0.69 0.908211
Target:  5'- aCCuGGCGCUGCugcuGCAGguggCCgaGCGCc -3'
miRNA:   3'- gGGuUCGCGACGu---UGUCaa--GGa-CGUG- -5'
1602 3' -53.6 NC_001347.2 + 78774 0.68 0.953498
Target:  5'- aCCGAGuCGCUGgAACGcUUCCU-CACg -3'
miRNA:   3'- gGGUUC-GCGACgUUGUcAAGGAcGUG- -5'
1602 3' -53.6 NC_001347.2 + 83496 0.68 0.945092
Target:  5'- cCCCAAGCuCaaagGUAcgguGCAGUUCC-GCACg -3'
miRNA:   3'- -GGGUUCGcGa---CGU----UGUCAAGGaCGUG- -5'
1602 3' -53.6 NC_001347.2 + 83923 0.69 0.919942
Target:  5'- aCCAGGCGCUgGCcACAGccUCCgGCGa -3'
miRNA:   3'- gGGUUCGCGA-CGuUGUCa-AGGaCGUg -5'
1602 3' -53.6 NC_001347.2 + 88598 0.71 0.844169
Target:  5'- gCCUggGCGaccugaGCGGCGGcggCCUGCGCg -3'
miRNA:   3'- -GGGuuCGCga----CGUUGUCaa-GGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 89045 0.69 0.935747
Target:  5'- gUCGGGCGCguUGCAACucUUgCUGCACg -3'
miRNA:   3'- gGGUUCGCG--ACGUUGucAAgGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 95011 0.66 0.978369
Target:  5'- -aCAGGUGCgUGCGaaaGCAGcgCgUGCACg -3'
miRNA:   3'- ggGUUCGCG-ACGU---UGUCaaGgACGUG- -5'
1602 3' -53.6 NC_001347.2 + 95258 0.67 0.970591
Target:  5'- gUCAGGUGCUcgaacacggacGCGAcCAGUUCCaagcgGCGCg -3'
miRNA:   3'- gGGUUCGCGA-----------CGUU-GUCAAGGa----CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.