Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1602 | 3' | -53.6 | NC_001347.2 | + | 96298 | 0.67 | 0.97173 |
Target: 5'- gCCGAGUGC-GCGGCgcacaugaucaucucGGUgcugagCCUGCACc -3' miRNA: 3'- gGGUUCGCGaCGUUG---------------UCAa-----GGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 96921 | 0.68 | 0.957356 |
Target: 5'- gCCCGGGcCGCcGcCAGCGuccGcgCCUGCACg -3' miRNA: 3'- -GGGUUC-GCGaC-GUUGU---CaaGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 103657 | 0.68 | 0.957356 |
Target: 5'- aCCAcGCGCaGCGuCAGggCCUGC-Cg -3' miRNA: 3'- gGGUuCGCGaCGUuGUCaaGGACGuG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 113414 | 0.66 | 0.982632 |
Target: 5'- gCCCGAcGCGUcGaCAGCAGUgcugCCgcaGCGCu -3' miRNA: 3'- -GGGUU-CGCGaC-GUUGUCAa---GGa--CGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 117548 | 0.7 | 0.901991 |
Target: 5'- uUCCaAAGCGUUgaccacgccgaGCAGCAGcUCCUGCGa -3' miRNA: 3'- -GGG-UUCGCGA-----------CGUUGUCaAGGACGUg -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 124525 | 0.67 | 0.967291 |
Target: 5'- gCCCGAGCacgcguuGCUGCAACGGacacCCU-CGCc -3' miRNA: 3'- -GGGUUCG-------CGACGUUGUCaa--GGAcGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 125496 | 0.67 | 0.960989 |
Target: 5'- gUCCAGGgccucuaggauaCGCUGCGAU--UUCUUGCACu -3' miRNA: 3'- -GGGUUC------------GCGACGUUGucAAGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 139682 | 0.77 | 0.513966 |
Target: 5'- ---cGGCGUUGCGGCAGUUUgUGCACg -3' miRNA: 3'- ggguUCGCGACGUUGUCAAGgACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 152226 | 0.69 | 0.935747 |
Target: 5'- -aCAuGGUGCUGCcGCGGcgCUUGCACu -3' miRNA: 3'- ggGU-UCGCGACGuUGUCaaGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 157615 | 0.67 | 0.970591 |
Target: 5'- gCCCGAGCgGCUGCAcgcguuguuggACGGUgucaccgCCU-CGCu -3' miRNA: 3'- -GGGUUCG-CGACGU-----------UGUCAa------GGAcGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 161542 | 1.12 | 0.004175 |
Target: 5'- aCCCAAGCGCUGCAACAGUUCCUGCACu -3' miRNA: 3'- -GGGUUCGCGACGUUGUCAAGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 162774 | 0.66 | 0.982632 |
Target: 5'- aCCAcGCGUUGCAAa---UCCUGCuGCa -3' miRNA: 3'- gGGUuCGCGACGUUgucaAGGACG-UG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 164023 | 0.69 | 0.92545 |
Target: 5'- gCCCAGGCGa---AAgAGUUCCUGCu- -3' miRNA: 3'- -GGGUUCGCgacgUUgUCAAGGACGug -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 168644 | 0.68 | 0.953498 |
Target: 5'- aCCCAcgaaGGCGCgcacGCGcucGCGGUcacgUCCUGgGCa -3' miRNA: 3'- -GGGU----UCGCGa---CGU---UGUCA----AGGACgUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 168955 | 0.66 | 0.982632 |
Target: 5'- gCCCGAGgGcCUGguAgAGUUCgagGCGCa -3' miRNA: 3'- -GGGUUCgC-GACguUgUCAAGga-CGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 174547 | 0.77 | 0.513966 |
Target: 5'- aCCUuccuGUGCUGCGACaAGUUCCUGCu- -3' miRNA: 3'- -GGGuu--CGCGACGUUG-UCAAGGACGug -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 178384 | 0.69 | 0.914196 |
Target: 5'- uUCCuGGCGCccaGCAuggcGCAGUUCUgGCACg -3' miRNA: 3'- -GGGuUCGCGa--CGU----UGUCAAGGaCGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 180630 | 0.69 | 0.930718 |
Target: 5'- aCCAGGUgcuacgucuGCUGuCAGgAGUaCCUGCACc -3' miRNA: 3'- gGGUUCG---------CGAC-GUUgUCAaGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 192644 | 0.75 | 0.624675 |
Target: 5'- gUgGAGaCGCUGCGuCGGUUUCUGCGCg -3' miRNA: 3'- gGgUUC-GCGACGUuGUCAAGGACGUG- -5' |
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1602 | 3' | -53.6 | NC_001347.2 | + | 196914 | 0.72 | 0.801593 |
Target: 5'- aUCAAGCGCgaGCuGCuGUgCCUGCACg -3' miRNA: 3'- gGGUUCGCGa-CGuUGuCAaGGACGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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