miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 3' -53.6 NC_001347.2 + 209746 0.67 0.973378
Target:  5'- aCCGugGGUGCcgGCGGuaugacggcCAGUUCUUGCGCu -3'
miRNA:   3'- gGGU--UCGCGa-CGUU---------GUCAAGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 201562 0.76 0.614441
Target:  5'- cCCCGAGcCGCUGCGuuucgucgGCAGcaUCUGCACu -3'
miRNA:   3'- -GGGUUC-GCGACGU--------UGUCaaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 196914 0.72 0.801593
Target:  5'- aUCAAGCGCgaGCuGCuGUgCCUGCACg -3'
miRNA:   3'- gGGUUCGCGa-CGuUGuCAaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 192644 0.75 0.624675
Target:  5'- gUgGAGaCGCUGCGuCGGUUUCUGCGCg -3'
miRNA:   3'- gGgUUC-GCGACGUuGUCAAGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 180630 0.69 0.930718
Target:  5'- aCCAGGUgcuacgucuGCUGuCAGgAGUaCCUGCACc -3'
miRNA:   3'- gGGUUCG---------CGAC-GUUgUCAaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 178384 0.69 0.914196
Target:  5'- uUCCuGGCGCccaGCAuggcGCAGUUCUgGCACg -3'
miRNA:   3'- -GGGuUCGCGa--CGU----UGUCAAGGaCGUG- -5'
1602 3' -53.6 NC_001347.2 + 174547 0.77 0.513966
Target:  5'- aCCUuccuGUGCUGCGACaAGUUCCUGCu- -3'
miRNA:   3'- -GGGuu--CGCGACGUUG-UCAAGGACGug -5'
1602 3' -53.6 NC_001347.2 + 168955 0.66 0.982632
Target:  5'- gCCCGAGgGcCUGguAgAGUUCgagGCGCa -3'
miRNA:   3'- -GGGUUCgC-GACguUgUCAAGga-CGUG- -5'
1602 3' -53.6 NC_001347.2 + 168644 0.68 0.953498
Target:  5'- aCCCAcgaaGGCGCgcacGCGcucGCGGUcacgUCCUGgGCa -3'
miRNA:   3'- -GGGU----UCGCGa---CGU---UGUCA----AGGACgUG- -5'
1602 3' -53.6 NC_001347.2 + 164023 0.69 0.92545
Target:  5'- gCCCAGGCGa---AAgAGUUCCUGCu- -3'
miRNA:   3'- -GGGUUCGCgacgUUgUCAAGGACGug -5'
1602 3' -53.6 NC_001347.2 + 162774 0.66 0.982632
Target:  5'- aCCAcGCGUUGCAAa---UCCUGCuGCa -3'
miRNA:   3'- gGGUuCGCGACGUUgucaAGGACG-UG- -5'
1602 3' -53.6 NC_001347.2 + 161542 1.12 0.004175
Target:  5'- aCCCAAGCGCUGCAACAGUUCCUGCACu -3'
miRNA:   3'- -GGGUUCGCGACGUUGUCAAGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 157615 0.67 0.970591
Target:  5'- gCCCGAGCgGCUGCAcgcguuguuggACGGUgucaccgCCU-CGCu -3'
miRNA:   3'- -GGGUUCG-CGACGU-----------UGUCAa------GGAcGUG- -5'
1602 3' -53.6 NC_001347.2 + 152226 0.69 0.935747
Target:  5'- -aCAuGGUGCUGCcGCGGcgCUUGCACu -3'
miRNA:   3'- ggGU-UCGCGACGuUGUCaaGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 139682 0.77 0.513966
Target:  5'- ---cGGCGUUGCGGCAGUUUgUGCACg -3'
miRNA:   3'- ggguUCGCGACGUUGUCAAGgACGUG- -5'
1602 3' -53.6 NC_001347.2 + 125496 0.67 0.960989
Target:  5'- gUCCAGGgccucuaggauaCGCUGCGAU--UUCUUGCACu -3'
miRNA:   3'- -GGGUUC------------GCGACGUUGucAAGGACGUG- -5'
1602 3' -53.6 NC_001347.2 + 124525 0.67 0.967291
Target:  5'- gCCCGAGCacgcguuGCUGCAACGGacacCCU-CGCc -3'
miRNA:   3'- -GGGUUCG-------CGACGUUGUCaa--GGAcGUG- -5'
1602 3' -53.6 NC_001347.2 + 117548 0.7 0.901991
Target:  5'- uUCCaAAGCGUUgaccacgccgaGCAGCAGcUCCUGCGa -3'
miRNA:   3'- -GGG-UUCGCGA-----------CGUUGUCaAGGACGUg -5'
1602 3' -53.6 NC_001347.2 + 113414 0.66 0.982632
Target:  5'- gCCCGAcGCGUcGaCAGCAGUgcugCCgcaGCGCu -3'
miRNA:   3'- -GGGUU-CGCGaC-GUUGUCAa---GGa--CGUG- -5'
1602 3' -53.6 NC_001347.2 + 103657 0.68 0.957356
Target:  5'- aCCAcGCGCaGCGuCAGggCCUGC-Cg -3'
miRNA:   3'- gGGUuCGCGaCGUuGUCaaGGACGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.