miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 168310 0.66 0.641657
Target:  5'- uGC-CGCGGCGCU--CGGUcgACGCGUUg -3'
miRNA:   3'- -UGcGCGCCGCGGcgGCCGa-UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 163711 0.66 0.641657
Target:  5'- cUGCGUGGC-UUGCUGGUacGCGUGUCg -3'
miRNA:   3'- uGCGCGCCGcGGCGGCCGa-UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 142857 0.66 0.639778
Target:  5'- aGCGcCGCGGcaccagagacagagaCcGCCGCCGcGCUGgcaaacuccgacauuCGCGUCg -3'
miRNA:   3'- -UGC-GCGCC---------------G-CGGCGGC-CGAU---------------GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 108293 0.66 0.637899
Target:  5'- -aGuCGCGGCGauaCGCCGGUgcugccgcacgagACGCGa- -3'
miRNA:   3'- ugC-GCGCCGCg--GCGGCCGa------------UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 36434 0.66 0.63226
Target:  5'- gACG-GCGGCGCgGuccgucgagaCCGGCggACGCGg- -3'
miRNA:   3'- -UGCgCGCCGCGgC----------GGCCGa-UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 68701 0.66 0.63226
Target:  5'- gACGCgGCGGCGCaaaGCgCGaGCgcaACGCucGUCg -3'
miRNA:   3'- -UGCG-CGCCGCGg--CG-GC-CGa--UGCG--CAG- -5'
1602 5' -64.9 NC_001347.2 + 154690 0.66 0.63226
Target:  5'- -gGUGCuGaGCGCCGCaCGGg-GCGCGUa -3'
miRNA:   3'- ugCGCG-C-CGCGGCG-GCCgaUGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 184208 0.66 0.63226
Target:  5'- -gGCGCGaUGCCGCagGGCggucgcuaGCGUGUCg -3'
miRNA:   3'- ugCGCGCcGCGGCGg-CCGa-------UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 47 0.66 0.622862
Target:  5'- gUGuCGgGGCGCgGCCGGgUGgGUGUg -3'
miRNA:   3'- uGC-GCgCCGCGgCGGCCgAUgCGCAg -5'
1602 5' -64.9 NC_001347.2 + 1607 0.66 0.622862
Target:  5'- -gGUGCGGCuguaccGCUGCaacCGGCUGgGCGUg -3'
miRNA:   3'- ugCGCGCCG------CGGCG---GCCGAUgCGCAg -5'
1602 5' -64.9 NC_001347.2 + 2410 0.66 0.622862
Target:  5'- cGCGCgGCGGCuGCUGCCcGaGCUGgacCGCGa- -3'
miRNA:   3'- -UGCG-CGCCG-CGGCGG-C-CGAU---GCGCag -5'
1602 5' -64.9 NC_001347.2 + 94379 0.66 0.622862
Target:  5'- -aGCGCGGC-CCGUggauCGGCcaGCGCuGUCu -3'
miRNA:   3'- ugCGCGCCGcGGCG----GCCGa-UGCG-CAG- -5'
1602 5' -64.9 NC_001347.2 + 182 0.66 0.622862
Target:  5'- gGCGUGUGGCGggugUGCCGGCgGgGUGUg -3'
miRNA:   3'- -UGCGCGCCGCg---GCGGCCGaUgCGCAg -5'
1602 5' -64.9 NC_001347.2 + 229661 0.66 0.622862
Target:  5'- gGCGUGUGGCGggugUGCCGGCgGgGUGUg -3'
miRNA:   3'- -UGCGCGCCGCg---GCGGCCGaUgCGCAg -5'
1602 5' -64.9 NC_001347.2 + 38730 0.66 0.613471
Target:  5'- gGCGCGCaGCaacGUcugucggagCGCCGGCUGaggcagcaGCGUCg -3'
miRNA:   3'- -UGCGCGcCG---CG---------GCGGCCGAUg-------CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 187349 0.66 0.613471
Target:  5'- gUGCGuuGCGUgGCCGug-GCGCGUCg -3'
miRNA:   3'- uGCGCgcCGCGgCGGCcgaUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 65189 0.66 0.613471
Target:  5'- -aGUGCGGCGauggcUCGCCGGC--CGUGUa -3'
miRNA:   3'- ugCGCGCCGC-----GGCGGCCGauGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 94310 0.66 0.604092
Target:  5'- -aGCGCGauCGCCGCCcacGGCguccucgGCGuCGUCg -3'
miRNA:   3'- ugCGCGCc-GCGGCGG---CCGa------UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 141814 0.66 0.604092
Target:  5'- gGCGUGcCGGCGCCcaugGCCGccacuGUgGCGCGUg -3'
miRNA:   3'- -UGCGC-GCCGCGG----CGGC-----CGaUGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 208846 0.66 0.604092
Target:  5'- -aGCGCcaGCGcCCGCCGGCgAUguaacagcugGCGUCg -3'
miRNA:   3'- ugCGCGc-CGC-GGCGGCCGaUG----------CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.