Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1602 | 5' | -64.9 | NC_001347.2 | + | 68701 | 0.66 | 0.63226 |
Target: 5'- gACGCgGCGGCGCaaaGCgCGaGCgcaACGCucGUCg -3' miRNA: 3'- -UGCG-CGCCGCGg--CG-GC-CGa--UGCG--CAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 94379 | 0.66 | 0.622862 |
Target: 5'- -aGCGCGGC-CCGUggauCGGCcaGCGCuGUCu -3' miRNA: 3'- ugCGCGCCGcGGCG----GCCGa-UGCG-CAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 182 | 0.66 | 0.622862 |
Target: 5'- gGCGUGUGGCGggugUGCCGGCgGgGUGUg -3' miRNA: 3'- -UGCGCGCCGCg---GCGGCCGaUgCGCAg -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 36434 | 0.66 | 0.63226 |
Target: 5'- gACG-GCGGCGCgGuccgucgagaCCGGCggACGCGg- -3' miRNA: 3'- -UGCgCGCCGCGgC----------GGCCGa-UGCGCag -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 229661 | 0.66 | 0.622862 |
Target: 5'- gGCGUGUGGCGggugUGCCGGCgGgGUGUg -3' miRNA: 3'- -UGCGCGCCGCg---GCGGCCGaUgCGCAg -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 67502 | 0.67 | 0.53013 |
Target: 5'- aACGCaccguCGGUGCCGgCGGCcACGUccGUCa -3' miRNA: 3'- -UGCGc----GCCGCGGCgGCCGaUGCG--CAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 25361 | 0.67 | 0.533761 |
Target: 5'- gGCGCuGCacaccuauGGCGCCguggguuggcagcugGCCGGCUugacCGCGUUg -3' miRNA: 3'- -UGCG-CG--------CCGCGG---------------CGGCCGAu---GCGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 154437 | 0.67 | 0.544706 |
Target: 5'- uGCGgGUGGCGCCGa-GGCUuguuguaaggcacCGUGUCu -3' miRNA: 3'- -UGCgCGCCGCGGCggCCGAu------------GCGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 152235 | 0.67 | 0.53013 |
Target: 5'- uGC-CGCGGCGCUugcacuuggaGCCGGCUuuucugccguACaGUGUCa -3' miRNA: 3'- -UGcGCGCCGCGG----------CGGCCGA----------UG-CGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 39076 | 0.67 | 0.548371 |
Target: 5'- uCGCGCccaCGCCGUucaucUGGCUGCGCGg- -3' miRNA: 3'- uGCGCGcc-GCGGCG-----GCCGAUGCGCag -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 175289 | 0.67 | 0.548371 |
Target: 5'- aAC-CGCGGaCGCCGUCGG-UAC-CGUCu -3' miRNA: 3'- -UGcGCGCC-GCGGCGGCCgAUGcGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 11793 | 0.67 | 0.547454 |
Target: 5'- cACGcCGCGGCaccaugcGCCaGUCcuaucGCUACGCGUCu -3' miRNA: 3'- -UGC-GCGCCG-------CGG-CGGc----CGAUGCGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 181744 | 0.67 | 0.548371 |
Target: 5'- cCGCuGCGuGCGCCGaCGGCguuucaaggugUGCGaCGUCg -3' miRNA: 3'- uGCG-CGC-CGCGGCgGCCG-----------AUGC-GCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 65509 | 0.67 | 0.557566 |
Target: 5'- uACGC-CGGacuGCCGcCCGaGCUgaagcagacGCGCGUCa -3' miRNA: 3'- -UGCGcGCCg--CGGC-GGC-CGA---------UGCGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 81451 | 0.67 | 0.557566 |
Target: 5'- -aGCGUGGCGUCGCgaacgugcaCGGUgaaagugGCGuCGUCg -3' miRNA: 3'- ugCGCGCCGCGGCG---------GCCGa------UGC-GCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 109372 | 0.67 | 0.557566 |
Target: 5'- cACGaCGagGGUGCCGCCcagGGCgacgACGaCGUCu -3' miRNA: 3'- -UGC-GCg-CCGCGGCGG---CCGa---UGC-GCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 196153 | 0.67 | 0.566804 |
Target: 5'- cCG-GCGGCccuguGCCGCgGGUUGCcCGUCa -3' miRNA: 3'- uGCgCGCCG-----CGGCGgCCGAUGcGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 88358 | 0.67 | 0.585391 |
Target: 5'- cCGCugGCGGCGCUGCC-GCgagACGaCGUg -3' miRNA: 3'- uGCG--CGCCGCGGCGGcCGa--UGC-GCAg -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 95471 | 0.67 | 0.57608 |
Target: 5'- gGCGCGCGucacGCGgCGCCGGUgucgGCGg- -3' miRNA: 3'- -UGCGCGC----CGCgGCGGCCGaug-CGCag -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 208052 | 0.67 | 0.529224 |
Target: 5'- -aGuCGCGGCGUucguuggCGCC-GCUGcCGCGUCg -3' miRNA: 3'- ugC-GCGCCGCG-------GCGGcCGAU-GCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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