Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1602 | 5' | -64.9 | NC_001347.2 | + | 161577 | 1.07 | 0.001063 |
Target: 5'- gACGCGCGGCGCCGCCGGCUACGCGUCc -3' miRNA: 3'- -UGCGCGCCGCGGCGGCCGAUGCGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 2096 | 0.8 | 0.090965 |
Target: 5'- cCGUaCGGCGCCGCCGGCggggGCGCGa- -3' miRNA: 3'- uGCGcGCCGCGGCGGCCGa---UGCGCag -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 1923 | 0.78 | 0.115575 |
Target: 5'- -gGCGCGGUGCUGCCcgcgcgguggcugGGCUGCGCGg- -3' miRNA: 3'- ugCGCGCCGCGGCGG-------------CCGAUGCGCag -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 39695 | 0.77 | 0.140198 |
Target: 5'- cGCGUGCuGGCGCCGCCuuGGCgccACGCaGUCu -3' miRNA: 3'- -UGCGCG-CCGCGGCGG--CCGa--UGCG-CAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 128664 | 0.76 | 0.165258 |
Target: 5'- gACGCGCccGUGCCGCCGGCgacCGcCGUCu -3' miRNA: 3'- -UGCGCGc-CGCGGCGGCCGau-GC-GCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 199784 | 0.75 | 0.181324 |
Target: 5'- gGCGC-CGGUGCCGCCGGUcuCGCG-Ca -3' miRNA: 3'- -UGCGcGCCGCGGCGGCCGauGCGCaG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 100880 | 0.74 | 0.238025 |
Target: 5'- -gGCGCGGCGCagCGCCGGCcauucucCGgGUCg -3' miRNA: 3'- ugCGCGCCGCG--GCGGCCGau-----GCgCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 2005 | 0.74 | 0.217636 |
Target: 5'- gGCGaGCGGCacggagacggagGCCGCCGGCggggACGCGcCg -3' miRNA: 3'- -UGCgCGCCG------------CGGCGGCCGa---UGCGCaG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 39976 | 0.74 | 0.238025 |
Target: 5'- gACGUGCGGCG-CGCaCGGCgaaaagaagACGCGUg -3' miRNA: 3'- -UGCGCGCCGCgGCG-GCCGa--------UGCGCAg -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 38777 | 0.73 | 0.271578 |
Target: 5'- cGCGCGgGGUGCCcacgcccaGCCGGUUGCaGCGg- -3' miRNA: 3'- -UGCGCgCCGCGG--------CGGCCGAUG-CGCag -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 38235 | 0.73 | 0.271578 |
Target: 5'- cAC-CGuCGGCGCCGCUGcuGCUGcCGCGUCc -3' miRNA: 3'- -UGcGC-GCCGCGGCGGC--CGAU-GCGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 115840 | 0.73 | 0.277526 |
Target: 5'- cCGCGUaGaGCGCCacGCCGGCguuuucGCGCGUCu -3' miRNA: 3'- uGCGCG-C-CGCGG--CGGCCGa-----UGCGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 38178 | 0.73 | 0.243366 |
Target: 5'- gGCGCGCGGCacgguccccgacGCCGCCGGacccgccauCGCuGUCg -3' miRNA: 3'- -UGCGCGCCG------------CGGCGGCCgau------GCG-CAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 127421 | 0.72 | 0.315403 |
Target: 5'- uGCGCGaCGGCGUCuCCGGUcugGCGCGa- -3' miRNA: 3'- -UGCGC-GCCGCGGcGGCCGa--UGCGCag -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 116891 | 0.72 | 0.283578 |
Target: 5'- cGCGCGCcccccgGGCaacccGCCGCCGGCUACgGCaUCc -3' miRNA: 3'- -UGCGCG------CCG-----CGGCGGCCGAUG-CGcAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 119074 | 0.72 | 0.302358 |
Target: 5'- cACGCcgcugaacccaGCGGCGCaGCCGcGCUAUGCGg- -3' miRNA: 3'- -UGCG-----------CGCCGCGgCGGC-CGAUGCGCag -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 142035 | 0.71 | 0.349851 |
Target: 5'- cAUGCGCcaGCGCUaCCucuuGGCUACGCGUCu -3' miRNA: 3'- -UGCGCGc-CGCGGcGG----CCGAUGCGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 24225 | 0.71 | 0.349851 |
Target: 5'- gACGCGCGGUcauauaGCCuCCGGCUgucAUGgGUCu -3' miRNA: 3'- -UGCGCGCCG------CGGcGGCCGA---UGCgCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 143718 | 0.71 | 0.335757 |
Target: 5'- uCGCcuauGCGGCaucUCGCCGGUgGCGCGUCa -3' miRNA: 3'- uGCG----CGCCGc--GGCGGCCGaUGCGCAG- -5' |
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1602 | 5' | -64.9 | NC_001347.2 | + | 158029 | 0.71 | 0.328867 |
Target: 5'- cACGCG-GGCGCCGgaCaGCagGCGCGUCa -3' miRNA: 3'- -UGCGCgCCGCGGCg-GcCGa-UGCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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