miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 161577 1.07 0.001063
Target:  5'- gACGCGCGGCGCCGCCGGCUACGCGUCc -3'
miRNA:   3'- -UGCGCGCCGCGGCGGCCGAUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 2096 0.8 0.090965
Target:  5'- cCGUaCGGCGCCGCCGGCggggGCGCGa- -3'
miRNA:   3'- uGCGcGCCGCGGCGGCCGa---UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 1923 0.78 0.115575
Target:  5'- -gGCGCGGUGCUGCCcgcgcgguggcugGGCUGCGCGg- -3'
miRNA:   3'- ugCGCGCCGCGGCGG-------------CCGAUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 39695 0.77 0.140198
Target:  5'- cGCGUGCuGGCGCCGCCuuGGCgccACGCaGUCu -3'
miRNA:   3'- -UGCGCG-CCGCGGCGG--CCGa--UGCG-CAG- -5'
1602 5' -64.9 NC_001347.2 + 128664 0.76 0.165258
Target:  5'- gACGCGCccGUGCCGCCGGCgacCGcCGUCu -3'
miRNA:   3'- -UGCGCGc-CGCGGCGGCCGau-GC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 199784 0.75 0.181324
Target:  5'- gGCGC-CGGUGCCGCCGGUcuCGCG-Ca -3'
miRNA:   3'- -UGCGcGCCGCGGCGGCCGauGCGCaG- -5'
1602 5' -64.9 NC_001347.2 + 2005 0.74 0.217636
Target:  5'- gGCGaGCGGCacggagacggagGCCGCCGGCggggACGCGcCg -3'
miRNA:   3'- -UGCgCGCCG------------CGGCGGCCGa---UGCGCaG- -5'
1602 5' -64.9 NC_001347.2 + 100880 0.74 0.238025
Target:  5'- -gGCGCGGCGCagCGCCGGCcauucucCGgGUCg -3'
miRNA:   3'- ugCGCGCCGCG--GCGGCCGau-----GCgCAG- -5'
1602 5' -64.9 NC_001347.2 + 39976 0.74 0.238025
Target:  5'- gACGUGCGGCG-CGCaCGGCgaaaagaagACGCGUg -3'
miRNA:   3'- -UGCGCGCCGCgGCG-GCCGa--------UGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 38178 0.73 0.243366
Target:  5'- gGCGCGCGGCacgguccccgacGCCGCCGGacccgccauCGCuGUCg -3'
miRNA:   3'- -UGCGCGCCG------------CGGCGGCCgau------GCG-CAG- -5'
1602 5' -64.9 NC_001347.2 + 38777 0.73 0.271578
Target:  5'- cGCGCGgGGUGCCcacgcccaGCCGGUUGCaGCGg- -3'
miRNA:   3'- -UGCGCgCCGCGG--------CGGCCGAUG-CGCag -5'
1602 5' -64.9 NC_001347.2 + 38235 0.73 0.271578
Target:  5'- cAC-CGuCGGCGCCGCUGcuGCUGcCGCGUCc -3'
miRNA:   3'- -UGcGC-GCCGCGGCGGC--CGAU-GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 115840 0.73 0.277526
Target:  5'- cCGCGUaGaGCGCCacGCCGGCguuuucGCGCGUCu -3'
miRNA:   3'- uGCGCG-C-CGCGG--CGGCCGa-----UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 116891 0.72 0.283578
Target:  5'- cGCGCGCcccccgGGCaacccGCCGCCGGCUACgGCaUCc -3'
miRNA:   3'- -UGCGCG------CCG-----CGGCGGCCGAUG-CGcAG- -5'
1602 5' -64.9 NC_001347.2 + 119074 0.72 0.302358
Target:  5'- cACGCcgcugaacccaGCGGCGCaGCCGcGCUAUGCGg- -3'
miRNA:   3'- -UGCG-----------CGCCGCGgCGGC-CGAUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 127421 0.72 0.315403
Target:  5'- uGCGCGaCGGCGUCuCCGGUcugGCGCGa- -3'
miRNA:   3'- -UGCGC-GCCGCGGcGGCCGa--UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 38314 0.71 0.322082
Target:  5'- cCGCcgGCGGCGCCGUaCGGCUGCGg--- -3'
miRNA:   3'- uGCG--CGCCGCGGCG-GCCGAUGCgcag -5'
1602 5' -64.9 NC_001347.2 + 2484 0.71 0.322082
Target:  5'- cGCGCGCcGCGCUGUgGGC-GCGCGa- -3'
miRNA:   3'- -UGCGCGcCGCGGCGgCCGaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 100186 0.71 0.328867
Target:  5'- gAUGCGCGGCGCCGC-GGCcuCGCc-- -3'
miRNA:   3'- -UGCGCGCCGCGGCGgCCGauGCGcag -5'
1602 5' -64.9 NC_001347.2 + 114187 0.71 0.328867
Target:  5'- uCGCGCGGacaGCCGCUGaGCUcGCuGCGUUu -3'
miRNA:   3'- uGCGCGCCg--CGGCGGC-CGA-UG-CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.