miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 158029 0.71 0.328867
Target:  5'- cACGCG-GGCGCCGgaCaGCagGCGCGUCa -3'
miRNA:   3'- -UGCGCgCCGCGGCg-GcCGa-UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 30614 0.71 0.335063
Target:  5'- gGC-CGCGGUGCCGgCGGCUAUGauccuguggucccCGUCc -3'
miRNA:   3'- -UGcGCGCCGCGGCgGCCGAUGC-------------GCAG- -5'
1602 5' -64.9 NC_001347.2 + 90224 0.71 0.335757
Target:  5'- gGCGUgGCGGCGUCGUuuuuCGGa-GCGCGUCg -3'
miRNA:   3'- -UGCG-CGCCGCGGCG----GCCgaUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 143718 0.71 0.335757
Target:  5'- uCGCcuauGCGGCaucUCGCCGGUgGCGCGUCa -3'
miRNA:   3'- uGCG----CGCCGc--GGCGGCCGaUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 37933 0.71 0.342752
Target:  5'- -aGCGCGGCG-CGCgGGUgcaggugcaGCGCGUCc -3'
miRNA:   3'- ugCGCGCCGCgGCGgCCGa--------UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 38013 0.71 0.342752
Target:  5'- cCGCGCGGCcucgGCgGCgGGCgccgacuCGCGUCc -3'
miRNA:   3'- uGCGCGCCG----CGgCGgCCGau-----GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 24225 0.71 0.349851
Target:  5'- gACGCGCGGUcauauaGCCuCCGGCUgucAUGgGUCu -3'
miRNA:   3'- -UGCGCGCCG------CGGcGGCCGA---UGCgCAG- -5'
1602 5' -64.9 NC_001347.2 + 142035 0.71 0.349851
Target:  5'- cAUGCGCcaGCGCUaCCucuuGGCUACGCGUCu -3'
miRNA:   3'- -UGCGCGc-CGCGGcGG----CCGAUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 168807 0.71 0.357054
Target:  5'- cGCGCGCGGUgGCCaaaCGGCcGCGCGa- -3'
miRNA:   3'- -UGCGCGCCG-CGGcg-GCCGaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 160702 0.71 0.364361
Target:  5'- uACGCGauCGGCgGCCGUCagcuccuGCUGCGUGUCg -3'
miRNA:   3'- -UGCGC--GCCG-CGGCGGc------CGAUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 113177 0.71 0.364361
Target:  5'- aACGCGCGccccaGCCGCCGGCgugGCGg- -3'
miRNA:   3'- -UGCGCGCcg---CGGCGGCCGaugCGCag -5'
1602 5' -64.9 NC_001347.2 + 1308 0.7 0.371025
Target:  5'- uACGCGCGGgugaCGCCGCgcagccagaugaaCGGCguggGCGCGa- -3'
miRNA:   3'- -UGCGCGCC----GCGGCG-------------GCCGa---UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 88264 0.7 0.371771
Target:  5'- -aGCGCGGCGUaCGCUGGUcACGUcgccGUCg -3'
miRNA:   3'- ugCGCGCCGCG-GCGGCCGaUGCG----CAG- -5'
1602 5' -64.9 NC_001347.2 + 54273 0.7 0.379282
Target:  5'- -gGCGCaguaccugcugGGCGCCGCUGGCa--GCGUUc -3'
miRNA:   3'- ugCGCG-----------CCGCGGCGGCCGaugCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 192243 0.7 0.386895
Target:  5'- cCGCGuCGGCcUCGCCGGCccgaGCGCGcCg -3'
miRNA:   3'- uGCGC-GCCGcGGCGGCCGa---UGCGCaG- -5'
1602 5' -64.9 NC_001347.2 + 183184 0.7 0.394607
Target:  5'- -aGCGCGuCGCaaaGCCGGUUGCaGCGUUc -3'
miRNA:   3'- ugCGCGCcGCGg--CGGCCGAUG-CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 85944 0.7 0.394607
Target:  5'- gAUGCcCGGCGagaCGCCGGC-GCGCGa- -3'
miRNA:   3'- -UGCGcGCCGCg--GCGGCCGaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 2349 0.7 0.402418
Target:  5'- uGCGCGCgGGCGUgcugggcgCGCUGGCgcugggACGCGa- -3'
miRNA:   3'- -UGCGCG-CCGCG--------GCGGCCGa-----UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 94797 0.7 0.402418
Target:  5'- cACGU-CGGCGUaaCGCCGGCgu-GCGUCa -3'
miRNA:   3'- -UGCGcGCCGCG--GCGGCCGaugCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 38411 0.7 0.410327
Target:  5'- cCGUGCcGCucGCCGCUGGCgGCGaCGUCg -3'
miRNA:   3'- uGCGCGcCG--CGGCGGCCGaUGC-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.