miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 94310 0.66 0.604092
Target:  5'- -aGCGCGauCGCCGCCcacGGCguccucgGCGuCGUCg -3'
miRNA:   3'- ugCGCGCc-GCGGCGG---CCGa------UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 141814 0.66 0.604092
Target:  5'- gGCGUGcCGGCGCCcaugGCCGccacuGUgGCGCGUg -3'
miRNA:   3'- -UGCGC-GCCGCGG----CGGC-----CGaUGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 142422 0.66 0.604092
Target:  5'- cGCGCccaGUGGCGUCgGCgCGGCguccgGCGUCg -3'
miRNA:   3'- -UGCG---CGCCGCGG-CG-GCCGaug--CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 40459 0.66 0.59473
Target:  5'- gACGCuGCcuGCGCacuGCCGG-UGCGUGUCg -3'
miRNA:   3'- -UGCG-CGc-CGCGg--CGGCCgAUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 90880 0.66 0.59473
Target:  5'- uUGCGCGGagacucgGCCGCCaagauccaggaGcGCUACGCGg- -3'
miRNA:   3'- uGCGCGCCg------CGGCGG-----------C-CGAUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 88358 0.67 0.585391
Target:  5'- cCGCugGCGGCGCUGCC-GCgagACGaCGUg -3'
miRNA:   3'- uGCG--CGCCGCGGCGGcCGa--UGC-GCAg -5'
1602 5' -64.9 NC_001347.2 + 95471 0.67 0.57608
Target:  5'- gGCGCGCGucacGCGgCGCCGGUgucgGCGg- -3'
miRNA:   3'- -UGCGCGC----CGCgGCGGCCGaug-CGCag -5'
1602 5' -64.9 NC_001347.2 + 197560 0.67 0.57608
Target:  5'- -gGCGUGGCgGCCGaCGGCaGCGUGc- -3'
miRNA:   3'- ugCGCGCCG-CGGCgGCCGaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 196153 0.67 0.566804
Target:  5'- cCG-GCGGCccuguGCCGCgGGUUGCcCGUCa -3'
miRNA:   3'- uGCgCGCCG-----CGGCGgCCGAUGcGCAG- -5'
1602 5' -64.9 NC_001347.2 + 65509 0.67 0.557566
Target:  5'- uACGC-CGGacuGCCGcCCGaGCUgaagcagacGCGCGUCa -3'
miRNA:   3'- -UGCGcGCCg--CGGC-GGC-CGA---------UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 81451 0.67 0.557566
Target:  5'- -aGCGUGGCGUCGCgaacgugcaCGGUgaaagugGCGuCGUCg -3'
miRNA:   3'- ugCGCGCCGCGGCG---------GCCGa------UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 109372 0.67 0.557566
Target:  5'- cACGaCGagGGUGCCGCCcagGGCgacgACGaCGUCu -3'
miRNA:   3'- -UGC-GCg-CCGCGGCGG---CCGa---UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 181744 0.67 0.548371
Target:  5'- cCGCuGCGuGCGCCGaCGGCguuucaaggugUGCGaCGUCg -3'
miRNA:   3'- uGCG-CGC-CGCGGCgGCCG-----------AUGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 175289 0.67 0.548371
Target:  5'- aAC-CGCGGaCGCCGUCGG-UAC-CGUCu -3'
miRNA:   3'- -UGcGCGCC-GCGGCGGCCgAUGcGCAG- -5'
1602 5' -64.9 NC_001347.2 + 39076 0.67 0.548371
Target:  5'- uCGCGCccaCGCCGUucaucUGGCUGCGCGg- -3'
miRNA:   3'- uGCGCGcc-GCGGCG-----GCCGAUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 11793 0.67 0.547454
Target:  5'- cACGcCGCGGCaccaugcGCCaGUCcuaucGCUACGCGUCu -3'
miRNA:   3'- -UGC-GCGCCG-------CGG-CGGc----CGAUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 154437 0.67 0.544706
Target:  5'- uGCGgGUGGCGCCGa-GGCUuguuguaaggcacCGUGUCu -3'
miRNA:   3'- -UGCgCGCCGCGGCggCCGAu------------GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 25361 0.67 0.533761
Target:  5'- gGCGCuGCacaccuauGGCGCCguggguuggcagcugGCCGGCUugacCGCGUUg -3'
miRNA:   3'- -UGCG-CG--------CCGCGG---------------CGGCCGAu---GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 67502 0.67 0.53013
Target:  5'- aACGCaccguCGGUGCCGgCGGCcACGUccGUCa -3'
miRNA:   3'- -UGCGc----GCCGCGGCgGCCGaUGCG--CAG- -5'
1602 5' -64.9 NC_001347.2 + 152235 0.67 0.53013
Target:  5'- uGC-CGCGGCGCUugcacuuggaGCCGGCUuuucugccguACaGUGUCa -3'
miRNA:   3'- -UGcGCGCCGCGG----------CGGCCGA----------UG-CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.