miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 208052 0.67 0.529224
Target:  5'- -aGuCGCGGCGUucguuggCGCC-GCUGcCGCGUCg -3'
miRNA:   3'- ugC-GCGCCGCG-------GCGGcCGAU-GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 129507 0.68 0.521092
Target:  5'- -aGCGCGGCGCCGCCucgu-CGgGUa -3'
miRNA:   3'- ugCGCGCCGCGGCGGccgauGCgCAg -5'
1602 5' -64.9 NC_001347.2 + 130129 0.68 0.512116
Target:  5'- uCGCGCGuG-GCCGUCucGCUACGcCGUCg -3'
miRNA:   3'- uGCGCGC-CgCGGCGGc-CGAUGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 77985 0.68 0.503203
Target:  5'- uACGUgGCGGCcgaaCCGCUGGCUuaugaGCGCGa- -3'
miRNA:   3'- -UGCG-CGCCGc---GGCGGCCGA-----UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 38576 0.68 0.503203
Target:  5'- -gGUGCGGCGCCGacgcgaaCGGCUcguACuGCGcCa -3'
miRNA:   3'- ugCGCGCCGCGGCg------GCCGA---UG-CGCaG- -5'
1602 5' -64.9 NC_001347.2 + 92259 0.68 0.494359
Target:  5'- gGC-CGUGGcCGCCGCCaugagGCGCGUCa -3'
miRNA:   3'- -UGcGCGCC-GCGGCGGccga-UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 111271 0.68 0.485586
Target:  5'- cAUGCGCGGCGCCGucuCCGaGUUucuccCGCaGUCc -3'
miRNA:   3'- -UGCGCGCCGCGGC---GGC-CGAu----GCG-CAG- -5'
1602 5' -64.9 NC_001347.2 + 38376 0.68 0.485586
Target:  5'- cGCGCaCGGCGCgucccCGCCGGCgGCcucCGUCu -3'
miRNA:   3'- -UGCGcGCCGCG-----GCGGCCGaUGc--GCAG- -5'
1602 5' -64.9 NC_001347.2 + 87003 0.68 0.480358
Target:  5'- aACGCGCGGCagGCCgcGCCGGCgugcuuaaagagcaACGCcUCc -3'
miRNA:   3'- -UGCGCGCCG--CGG--CGGCCGa-------------UGCGcAG- -5'
1602 5' -64.9 NC_001347.2 + 73720 0.68 0.476888
Target:  5'- cCGCG-GGCaccGCCGCCGGagGCGCGg- -3'
miRNA:   3'- uGCGCgCCG---CGGCGGCCgaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 158092 0.68 0.476888
Target:  5'- -aGCGCcGCGCUGCgCGGCggccucaucgGCaGCGUCa -3'
miRNA:   3'- ugCGCGcCGCGGCG-GCCGa---------UG-CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 705 0.69 0.468268
Target:  5'- cUGCGUGGCGCCaaGgCGGCgccagcACGCGcCg -3'
miRNA:   3'- uGCGCGCCGCGG--CgGCCGa-----UGCGCaG- -5'
1602 5' -64.9 NC_001347.2 + 168358 0.69 0.468268
Target:  5'- cCGcCGCGGUGCCGCCgcucuguucGGCUauuACG-GUCu -3'
miRNA:   3'- uGC-GCGCCGCGGCGG---------CCGA---UGCgCAG- -5'
1602 5' -64.9 NC_001347.2 + 199131 0.69 0.459729
Target:  5'- cUGCGCGGCuaC-CCGGCguacCGUGUCg -3'
miRNA:   3'- uGCGCGCCGcgGcGGCCGau--GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 1803 0.69 0.448753
Target:  5'- gGCGCGUGGCaGgaGCUGGCgcaguacgagccguuCGCGUCg -3'
miRNA:   3'- -UGCGCGCCG-CggCGGCCGau-------------GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 41698 0.69 0.442903
Target:  5'- gGCGCGUGGa--UGCCGGCcgagacauuUACGUGUCc -3'
miRNA:   3'- -UGCGCGCCgcgGCGGCCG---------AUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 175050 0.69 0.44124
Target:  5'- aACGagaGCGGCGCCGUcuuCGGCgugcaucccgagACGCGg- -3'
miRNA:   3'- -UGCg--CGCCGCGGCG---GCCGa-----------UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 92385 0.69 0.434622
Target:  5'- gGCGC-CGGCGCCGCCua----GCGUCa -3'
miRNA:   3'- -UGCGcGCCGCGGCGGccgaugCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 16931 0.69 0.426431
Target:  5'- uACGCGCGGCaGUuuCGCUGGCUcugucgagGCGaCGUUu -3'
miRNA:   3'- -UGCGCGCCG-CG--GCGGCCGA--------UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 77049 0.69 0.424803
Target:  5'- cACGCGC-GUGCCGCCGGCcucggacgaaGCGg- -3'
miRNA:   3'- -UGCGCGcCGCGGCGGCCGaug-------CGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.