miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 47 0.66 0.622862
Target:  5'- gUGuCGgGGCGCgGCCGGgUGgGUGUg -3'
miRNA:   3'- uGC-GCgCCGCGgCGGCCgAUgCGCAg -5'
1602 5' -64.9 NC_001347.2 + 182 0.66 0.622862
Target:  5'- gGCGUGUGGCGggugUGCCGGCgGgGUGUg -3'
miRNA:   3'- -UGCGCGCCGCg---GCGGCCGaUgCGCAg -5'
1602 5' -64.9 NC_001347.2 + 705 0.69 0.468268
Target:  5'- cUGCGUGGCGCCaaGgCGGCgccagcACGCGcCg -3'
miRNA:   3'- uGCGCGCCGCGG--CgGCCGa-----UGCGCaG- -5'
1602 5' -64.9 NC_001347.2 + 1308 0.7 0.371025
Target:  5'- uACGCGCGGgugaCGCCGCgcagccagaugaaCGGCguggGCGCGa- -3'
miRNA:   3'- -UGCGCGCC----GCGGCG-------------GCCGa---UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 1607 0.66 0.622862
Target:  5'- -gGUGCGGCuguaccGCUGCaacCGGCUGgGCGUg -3'
miRNA:   3'- ugCGCGCCG------CGGCG---GCCGAUgCGCAg -5'
1602 5' -64.9 NC_001347.2 + 1803 0.69 0.448753
Target:  5'- gGCGCGUGGCaGgaGCUGGCgcaguacgagccguuCGCGUCg -3'
miRNA:   3'- -UGCGCGCCG-CggCGGCCGau-------------GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 1923 0.78 0.115575
Target:  5'- -gGCGCGGUGCUGCCcgcgcgguggcugGGCUGCGCGg- -3'
miRNA:   3'- ugCGCGCCGCGGCGG-------------CCGAUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 2005 0.74 0.217636
Target:  5'- gGCGaGCGGCacggagacggagGCCGCCGGCggggACGCGcCg -3'
miRNA:   3'- -UGCgCGCCG------------CGGCGGCCGa---UGCGCaG- -5'
1602 5' -64.9 NC_001347.2 + 2096 0.8 0.090965
Target:  5'- cCGUaCGGCGCCGCCGGCggggGCGCGa- -3'
miRNA:   3'- uGCGcGCCGCGGCGGCCGa---UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 2349 0.7 0.402418
Target:  5'- uGCGCGCgGGCGUgcugggcgCGCUGGCgcugggACGCGa- -3'
miRNA:   3'- -UGCGCG-CCGCG--------GCGGCCGa-----UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 2410 0.66 0.622862
Target:  5'- cGCGCgGCGGCuGCUGCCcGaGCUGgacCGCGa- -3'
miRNA:   3'- -UGCG-CGCCG-CGGCGG-C-CGAU---GCGCag -5'
1602 5' -64.9 NC_001347.2 + 2484 0.71 0.322082
Target:  5'- cGCGCGCcGCGCUGUgGGC-GCGCGa- -3'
miRNA:   3'- -UGCGCGcCGCGGCGgCCGaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 11793 0.67 0.547454
Target:  5'- cACGcCGCGGCaccaugcGCCaGUCcuaucGCUACGCGUCu -3'
miRNA:   3'- -UGC-GCGCCG-------CGG-CGGc----CGAUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 16931 0.69 0.426431
Target:  5'- uACGCGCGGCaGUuuCGCUGGCUcugucgagGCGaCGUUu -3'
miRNA:   3'- -UGCGCGCCG-CG--GCGGCCGA--------UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 24225 0.71 0.349851
Target:  5'- gACGCGCGGUcauauaGCCuCCGGCUgucAUGgGUCu -3'
miRNA:   3'- -UGCGCGCCG------CGGcGGCCGA---UGCgCAG- -5'
1602 5' -64.9 NC_001347.2 + 25361 0.67 0.533761
Target:  5'- gGCGCuGCacaccuauGGCGCCguggguuggcagcugGCCGGCUugacCGCGUUg -3'
miRNA:   3'- -UGCG-CG--------CCGCGG---------------CGGCCGAu---GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 30614 0.71 0.335063
Target:  5'- gGC-CGCGGUGCCGgCGGCUAUGauccuguggucccCGUCc -3'
miRNA:   3'- -UGcGCGCCGCGGCgGCCGAUGC-------------GCAG- -5'
1602 5' -64.9 NC_001347.2 + 36434 0.66 0.63226
Target:  5'- gACG-GCGGCGCgGuccgucgagaCCGGCggACGCGg- -3'
miRNA:   3'- -UGCgCGCCGCGgC----------GGCCGa-UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 37933 0.71 0.342752
Target:  5'- -aGCGCGGCG-CGCgGGUgcaggugcaGCGCGUCc -3'
miRNA:   3'- ugCGCGCCGCgGCGgCCGa--------UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 38013 0.71 0.342752
Target:  5'- cCGCGCGGCcucgGCgGCgGGCgccgacuCGCGUCc -3'
miRNA:   3'- uGCGCGCCG----CGgCGgCCGau-----GCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.