miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 38178 0.73 0.243366
Target:  5'- gGCGCGCGGCacgguccccgacGCCGCCGGacccgccauCGCuGUCg -3'
miRNA:   3'- -UGCGCGCCG------------CGGCGGCCgau------GCG-CAG- -5'
1602 5' -64.9 NC_001347.2 + 38235 0.73 0.271578
Target:  5'- cAC-CGuCGGCGCCGCUGcuGCUGcCGCGUCc -3'
miRNA:   3'- -UGcGC-GCCGCGGCGGC--CGAU-GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 38314 0.71 0.322082
Target:  5'- cCGCcgGCGGCGCCGUaCGGCUGCGg--- -3'
miRNA:   3'- uGCG--CGCCGCGGCG-GCCGAUGCgcag -5'
1602 5' -64.9 NC_001347.2 + 38376 0.68 0.485586
Target:  5'- cGCGCaCGGCGCgucccCGCCGGCgGCcucCGUCu -3'
miRNA:   3'- -UGCGcGCCGCG-----GCGGCCGaUGc--GCAG- -5'
1602 5' -64.9 NC_001347.2 + 38411 0.7 0.410327
Target:  5'- cCGUGCcGCucGCCGCUGGCgGCGaCGUCg -3'
miRNA:   3'- uGCGCGcCG--CGGCGGCCGaUGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 38576 0.68 0.503203
Target:  5'- -gGUGCGGCGCCGacgcgaaCGGCUcguACuGCGcCa -3'
miRNA:   3'- ugCGCGCCGCGGCg------GCCGA---UG-CGCaG- -5'
1602 5' -64.9 NC_001347.2 + 38730 0.66 0.613471
Target:  5'- gGCGCGCaGCaacGUcugucggagCGCCGGCUGaggcagcaGCGUCg -3'
miRNA:   3'- -UGCGCGcCG---CG---------GCGGCCGAUg-------CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 38777 0.73 0.271578
Target:  5'- cGCGCGgGGUGCCcacgcccaGCCGGUUGCaGCGg- -3'
miRNA:   3'- -UGCGCgCCGCGG--------CGGCCGAUG-CGCag -5'
1602 5' -64.9 NC_001347.2 + 39076 0.67 0.548371
Target:  5'- uCGCGCccaCGCCGUucaucUGGCUGCGCGg- -3'
miRNA:   3'- uGCGCGcc-GCGGCG-----GCCGAUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 39695 0.77 0.140198
Target:  5'- cGCGUGCuGGCGCCGCCuuGGCgccACGCaGUCu -3'
miRNA:   3'- -UGCGCG-CCGCGGCGG--CCGa--UGCG-CAG- -5'
1602 5' -64.9 NC_001347.2 + 39976 0.74 0.238025
Target:  5'- gACGUGCGGCG-CGCaCGGCgaaaagaagACGCGUg -3'
miRNA:   3'- -UGCGCGCCGCgGCG-GCCGa--------UGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 40459 0.66 0.59473
Target:  5'- gACGCuGCcuGCGCacuGCCGG-UGCGUGUCg -3'
miRNA:   3'- -UGCG-CGc-CGCGg--CGGCCgAUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 41698 0.69 0.442903
Target:  5'- gGCGCGUGGa--UGCCGGCcgagacauuUACGUGUCc -3'
miRNA:   3'- -UGCGCGCCgcgGCGGCCG---------AUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 54273 0.7 0.379282
Target:  5'- -gGCGCaguaccugcugGGCGCCGCUGGCa--GCGUUc -3'
miRNA:   3'- ugCGCG-----------CCGCGGCGGCCGaugCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 65189 0.66 0.613471
Target:  5'- -aGUGCGGCGauggcUCGCCGGC--CGUGUa -3'
miRNA:   3'- ugCGCGCCGC-----GGCGGCCGauGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 65509 0.67 0.557566
Target:  5'- uACGC-CGGacuGCCGcCCGaGCUgaagcagacGCGCGUCa -3'
miRNA:   3'- -UGCGcGCCg--CGGC-GGC-CGA---------UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 67502 0.67 0.53013
Target:  5'- aACGCaccguCGGUGCCGgCGGCcACGUccGUCa -3'
miRNA:   3'- -UGCGc----GCCGCGGCgGCCGaUGCG--CAG- -5'
1602 5' -64.9 NC_001347.2 + 68701 0.66 0.63226
Target:  5'- gACGCgGCGGCGCaaaGCgCGaGCgcaACGCucGUCg -3'
miRNA:   3'- -UGCG-CGCCGCGg--CG-GC-CGa--UGCG--CAG- -5'
1602 5' -64.9 NC_001347.2 + 73720 0.68 0.476888
Target:  5'- cCGCG-GGCaccGCCGCCGGagGCGCGg- -3'
miRNA:   3'- uGCGCgCCG---CGGCGGCCgaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 77049 0.69 0.424803
Target:  5'- cACGCGC-GUGCCGCCGGCcucggacgaaGCGg- -3'
miRNA:   3'- -UGCGCGcCGCGGCGGCCGaug-------CGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.