miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 77985 0.68 0.503203
Target:  5'- uACGUgGCGGCcgaaCCGCUGGCUuaugaGCGCGa- -3'
miRNA:   3'- -UGCG-CGCCGc---GGCGGCCGA-----UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 79178 0.66 0.604092
Target:  5'- gACGaggaGCGGCGCgGCCcagaGCGUGUCg -3'
miRNA:   3'- -UGCg---CGCCGCGgCGGccgaUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 81451 0.67 0.557566
Target:  5'- -aGCGUGGCGUCGCgaacgugcaCGGUgaaagugGCGuCGUCg -3'
miRNA:   3'- ugCGCGCCGCGGCG---------GCCGa------UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 85944 0.7 0.394607
Target:  5'- gAUGCcCGGCGagaCGCCGGC-GCGCGa- -3'
miRNA:   3'- -UGCGcGCCGCg--GCGGCCGaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 87003 0.68 0.480358
Target:  5'- aACGCGCGGCagGCCgcGCCGGCgugcuuaaagagcaACGCcUCc -3'
miRNA:   3'- -UGCGCGCCG--CGG--CGGCCGa-------------UGCGcAG- -5'
1602 5' -64.9 NC_001347.2 + 88264 0.7 0.371771
Target:  5'- -aGCGCGGCGUaCGCUGGUcACGUcgccGUCg -3'
miRNA:   3'- ugCGCGCCGCG-GCGGCCGaUGCG----CAG- -5'
1602 5' -64.9 NC_001347.2 + 88358 0.67 0.585391
Target:  5'- cCGCugGCGGCGCUGCC-GCgagACGaCGUg -3'
miRNA:   3'- uGCG--CGCCGCGGCGGcCGa--UGC-GCAg -5'
1602 5' -64.9 NC_001347.2 + 90224 0.71 0.335757
Target:  5'- gGCGUgGCGGCGUCGUuuuuCGGa-GCGCGUCg -3'
miRNA:   3'- -UGCG-CGCCGCGGCG----GCCgaUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 90880 0.66 0.59473
Target:  5'- uUGCGCGGagacucgGCCGCCaagauccaggaGcGCUACGCGg- -3'
miRNA:   3'- uGCGCGCCg------CGGCGG-----------C-CGAUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 92259 0.68 0.494359
Target:  5'- gGC-CGUGGcCGCCGCCaugagGCGCGUCa -3'
miRNA:   3'- -UGcGCGCC-GCGGCGGccga-UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 92385 0.69 0.434622
Target:  5'- gGCGC-CGGCGCCGCCua----GCGUCa -3'
miRNA:   3'- -UGCGcGCCGCGGCGGccgaugCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 94310 0.66 0.604092
Target:  5'- -aGCGCGauCGCCGCCcacGGCguccucgGCGuCGUCg -3'
miRNA:   3'- ugCGCGCc-GCGGCGG---CCGa------UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 94379 0.66 0.622862
Target:  5'- -aGCGCGGC-CCGUggauCGGCcaGCGCuGUCu -3'
miRNA:   3'- ugCGCGCCGcGGCG----GCCGa-UGCG-CAG- -5'
1602 5' -64.9 NC_001347.2 + 94797 0.7 0.402418
Target:  5'- cACGU-CGGCGUaaCGCCGGCgu-GCGUCa -3'
miRNA:   3'- -UGCGcGCCGCG--GCGGCCGaugCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 95471 0.67 0.57608
Target:  5'- gGCGCGCGucacGCGgCGCCGGUgucgGCGg- -3'
miRNA:   3'- -UGCGCGC----CGCgGCGGCCGaug-CGCag -5'
1602 5' -64.9 NC_001347.2 + 99303 0.66 0.604092
Target:  5'- gGCGCGUaaCGCUGCaCGGCUagauguuuACGaCGUCg -3'
miRNA:   3'- -UGCGCGccGCGGCG-GCCGA--------UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 100186 0.71 0.328867
Target:  5'- gAUGCGCGGCGCCGC-GGCcuCGCc-- -3'
miRNA:   3'- -UGCGCGCCGCGGCGgCCGauGCGcag -5'
1602 5' -64.9 NC_001347.2 + 100880 0.74 0.238025
Target:  5'- -gGCGCGGCGCagCGCCGGCcauucucCGgGUCg -3'
miRNA:   3'- ugCGCGCCGCG--GCGGCCGau-----GCgCAG- -5'
1602 5' -64.9 NC_001347.2 + 108293 0.66 0.637899
Target:  5'- -aGuCGCGGCGauaCGCCGGUgcugccgcacgagACGCGa- -3'
miRNA:   3'- ugC-GCGCCGCg--GCGGCCGa------------UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 109372 0.67 0.557566
Target:  5'- cACGaCGagGGUGCCGCCcagGGCgacgACGaCGUCu -3'
miRNA:   3'- -UGC-GCg-CCGCGGCGG---CCGa---UGC-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.