miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 229661 0.66 0.622862
Target:  5'- gGCGUGUGGCGggugUGCCGGCgGgGUGUg -3'
miRNA:   3'- -UGCGCGCCGCg---GCGGCCGaUgCGCAg -5'
1602 5' -64.9 NC_001347.2 + 208846 0.66 0.604092
Target:  5'- -aGCGCcaGCGcCCGCCGGCgAUguaacagcugGCGUCg -3'
miRNA:   3'- ugCGCGc-CGC-GGCGGCCGaUG----------CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 208052 0.67 0.529224
Target:  5'- -aGuCGCGGCGUucguuggCGCC-GCUGcCGCGUCg -3'
miRNA:   3'- ugC-GCGCCGCG-------GCGGcCGAU-GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 199784 0.75 0.181324
Target:  5'- gGCGC-CGGUGCCGCCGGUcuCGCG-Ca -3'
miRNA:   3'- -UGCGcGCCGCGGCGGCCGauGCGCaG- -5'
1602 5' -64.9 NC_001347.2 + 199131 0.69 0.459729
Target:  5'- cUGCGCGGCuaC-CCGGCguacCGUGUCg -3'
miRNA:   3'- uGCGCGCCGcgGcGGCCGau--GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 197560 0.67 0.57608
Target:  5'- -gGCGUGGCgGCCGaCGGCaGCGUGc- -3'
miRNA:   3'- ugCGCGCCG-CGGCgGCCGaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 196964 0.69 0.418332
Target:  5'- uCGCGCGcCGCCGacgcccgagaCGGC-GCGCGUCc -3'
miRNA:   3'- uGCGCGCcGCGGCg---------GCCGaUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 196153 0.67 0.566804
Target:  5'- cCG-GCGGCccuguGCCGCgGGUUGCcCGUCa -3'
miRNA:   3'- uGCgCGCCG-----CGGCGgCCGAUGcGCAG- -5'
1602 5' -64.9 NC_001347.2 + 192243 0.7 0.386895
Target:  5'- cCGCGuCGGCcUCGCCGGCccgaGCGCGcCg -3'
miRNA:   3'- uGCGC-GCCGcGGCGGCCGa---UGCGCaG- -5'
1602 5' -64.9 NC_001347.2 + 187349 0.66 0.613471
Target:  5'- gUGCGuuGCGUgGCCGug-GCGCGUCg -3'
miRNA:   3'- uGCGCgcCGCGgCGGCcgaUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 184208 0.66 0.63226
Target:  5'- -gGCGCGaUGCCGCagGGCggucgcuaGCGUGUCg -3'
miRNA:   3'- ugCGCGCcGCGGCGg-CCGa-------UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 183184 0.7 0.394607
Target:  5'- -aGCGCGuCGCaaaGCCGGUUGCaGCGUUc -3'
miRNA:   3'- ugCGCGCcGCGg--CGGCCGAUG-CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 181744 0.67 0.548371
Target:  5'- cCGCuGCGuGCGCCGaCGGCguuucaaggugUGCGaCGUCg -3'
miRNA:   3'- uGCG-CGC-CGCGGCgGCCG-----------AUGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 175289 0.67 0.548371
Target:  5'- aAC-CGCGGaCGCCGUCGG-UAC-CGUCu -3'
miRNA:   3'- -UGcGCGCC-GCGGCGGCCgAUGcGCAG- -5'
1602 5' -64.9 NC_001347.2 + 175050 0.69 0.44124
Target:  5'- aACGagaGCGGCGCCGUcuuCGGCgugcaucccgagACGCGg- -3'
miRNA:   3'- -UGCg--CGCCGCGGCG---GCCGa-----------UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 168807 0.71 0.357054
Target:  5'- cGCGCGCGGUgGCCaaaCGGCcGCGCGa- -3'
miRNA:   3'- -UGCGCGCCG-CGGcg-GCCGaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 168358 0.69 0.468268
Target:  5'- cCGcCGCGGUGCCGCCgcucuguucGGCUauuACG-GUCu -3'
miRNA:   3'- uGC-GCGCCGCGGCGG---------CCGA---UGCgCAG- -5'
1602 5' -64.9 NC_001347.2 + 168310 0.66 0.641657
Target:  5'- uGC-CGCGGCGCU--CGGUcgACGCGUUg -3'
miRNA:   3'- -UGcGCGCCGCGGcgGCCGa-UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 163711 0.66 0.641657
Target:  5'- cUGCGUGGC-UUGCUGGUacGCGUGUCg -3'
miRNA:   3'- uGCGCGCCGcGGCGGCCGa-UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 161577 1.07 0.001063
Target:  5'- gACGCGCGGCGCCGCCGGCUACGCGUCc -3'
miRNA:   3'- -UGCGCGCCGCGGCGGCCGAUGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.