miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 160702 0.71 0.364361
Target:  5'- uACGCGauCGGCgGCCGUCagcuccuGCUGCGUGUCg -3'
miRNA:   3'- -UGCGC--GCCG-CGGCGGc------CGAUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 158092 0.68 0.476888
Target:  5'- -aGCGCcGCGCUGCgCGGCggccucaucgGCaGCGUCa -3'
miRNA:   3'- ugCGCGcCGCGGCG-GCCGa---------UG-CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 158029 0.71 0.328867
Target:  5'- cACGCG-GGCGCCGgaCaGCagGCGCGUCa -3'
miRNA:   3'- -UGCGCgCCGCGGCg-GcCGa-UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 154690 0.66 0.63226
Target:  5'- -gGUGCuGaGCGCCGCaCGGg-GCGCGUa -3'
miRNA:   3'- ugCGCG-C-CGCGGCG-GCCgaUGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 154437 0.67 0.544706
Target:  5'- uGCGgGUGGCGCCGa-GGCUuguuguaaggcacCGUGUCu -3'
miRNA:   3'- -UGCgCGCCGCGGCggCCGAu------------GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 153235 0.69 0.418332
Target:  5'- gGCGCG-GGCGCgCGUCGGCcgGCGaCGg- -3'
miRNA:   3'- -UGCGCgCCGCG-GCGGCCGa-UGC-GCag -5'
1602 5' -64.9 NC_001347.2 + 152235 0.67 0.53013
Target:  5'- uGC-CGCGGCGCUugcacuuggaGCCGGCUuuucugccguACaGUGUCa -3'
miRNA:   3'- -UGcGCGCCGCGG----------CGGCCGA----------UG-CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 143718 0.71 0.335757
Target:  5'- uCGCcuauGCGGCaucUCGCCGGUgGCGCGUCa -3'
miRNA:   3'- uGCG----CGCCGc--GGCGGCCGaUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 142857 0.66 0.639778
Target:  5'- aGCGcCGCGGcaccagagacagagaCcGCCGCCGcGCUGgcaaacuccgacauuCGCGUCg -3'
miRNA:   3'- -UGC-GCGCC---------------G-CGGCGGC-CGAU---------------GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 142422 0.66 0.604092
Target:  5'- cGCGCccaGUGGCGUCgGCgCGGCguccgGCGUCg -3'
miRNA:   3'- -UGCG---CGCCGCGG-CG-GCCGaug--CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 142035 0.71 0.349851
Target:  5'- cAUGCGCcaGCGCUaCCucuuGGCUACGCGUCu -3'
miRNA:   3'- -UGCGCGc-CGCGGcGG----CCGAUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 141814 0.66 0.604092
Target:  5'- gGCGUGcCGGCGCCcaugGCCGccacuGUgGCGCGUg -3'
miRNA:   3'- -UGCGC-GCCGCGG----CGGC-----CGaUGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 130129 0.68 0.512116
Target:  5'- uCGCGCGuG-GCCGUCucGCUACGcCGUCg -3'
miRNA:   3'- uGCGCGC-CgCGGCGGc-CGAUGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 129507 0.68 0.521092
Target:  5'- -aGCGCGGCGCCGCCucgu-CGgGUa -3'
miRNA:   3'- ugCGCGCCGCGGCGGccgauGCgCAg -5'
1602 5' -64.9 NC_001347.2 + 128664 0.76 0.165258
Target:  5'- gACGCGCccGUGCCGCCGGCgacCGcCGUCu -3'
miRNA:   3'- -UGCGCGc-CGCGGCGGCCGau-GC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 127421 0.72 0.315403
Target:  5'- uGCGCGaCGGCGUCuCCGGUcugGCGCGa- -3'
miRNA:   3'- -UGCGC-GCCGCGGcGGCCGa--UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 119074 0.72 0.302358
Target:  5'- cACGCcgcugaacccaGCGGCGCaGCCGcGCUAUGCGg- -3'
miRNA:   3'- -UGCG-----------CGCCGCGgCGGC-CGAUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 116891 0.72 0.283578
Target:  5'- cGCGCGCcccccgGGCaacccGCCGCCGGCUACgGCaUCc -3'
miRNA:   3'- -UGCGCG------CCG-----CGGCGGCCGAUG-CGcAG- -5'
1602 5' -64.9 NC_001347.2 + 115840 0.73 0.277526
Target:  5'- cCGCGUaGaGCGCCacGCCGGCguuuucGCGCGUCu -3'
miRNA:   3'- uGCGCG-C-CGCGG--CGGCCGa-----UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 114187 0.71 0.328867
Target:  5'- uCGCGCGGacaGCCGCUGaGCUcGCuGCGUUu -3'
miRNA:   3'- uGCGCGCCg--CGGCGGC-CGA-UG-CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.