miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1602 5' -64.9 NC_001347.2 + 154690 0.66 0.63226
Target:  5'- -gGUGCuGaGCGCCGCaCGGg-GCGCGUa -3'
miRNA:   3'- ugCGCG-C-CGCGGCG-GCCgaUGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 184208 0.66 0.63226
Target:  5'- -gGCGCGaUGCCGCagGGCggucgcuaGCGUGUCg -3'
miRNA:   3'- ugCGCGCcGCGGCGg-CCGa-------UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 108293 0.66 0.637899
Target:  5'- -aGuCGCGGCGauaCGCCGGUgcugccgcacgagACGCGa- -3'
miRNA:   3'- ugC-GCGCCGCg--GCGGCCGa------------UGCGCag -5'
1602 5' -64.9 NC_001347.2 + 142857 0.66 0.639778
Target:  5'- aGCGcCGCGGcaccagagacagagaCcGCCGCCGcGCUGgcaaacuccgacauuCGCGUCg -3'
miRNA:   3'- -UGC-GCGCC---------------G-CGGCGGC-CGAU---------------GCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 163711 0.66 0.641657
Target:  5'- cUGCGUGGC-UUGCUGGUacGCGUGUCg -3'
miRNA:   3'- uGCGCGCCGcGGCGGCCGa-UGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 38730 0.66 0.613471
Target:  5'- gGCGCGCaGCaacGUcugucggagCGCCGGCUGaggcagcaGCGUCg -3'
miRNA:   3'- -UGCGCGcCG---CG---------GCGGCCGAUg-------CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 187349 0.66 0.613471
Target:  5'- gUGCGuuGCGUgGCCGug-GCGCGUCg -3'
miRNA:   3'- uGCGCgcCGCGgCGGCcgaUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 196153 0.67 0.566804
Target:  5'- cCG-GCGGCccuguGCCGCgGGUUGCcCGUCa -3'
miRNA:   3'- uGCgCGCCG-----CGGCGgCCGAUGcGCAG- -5'
1602 5' -64.9 NC_001347.2 + 88358 0.67 0.585391
Target:  5'- cCGCugGCGGCGCUGCC-GCgagACGaCGUg -3'
miRNA:   3'- uGCG--CGCCGCGGCGGcCGa--UGC-GCAg -5'
1602 5' -64.9 NC_001347.2 + 90880 0.66 0.59473
Target:  5'- uUGCGCGGagacucgGCCGCCaagauccaggaGcGCUACGCGg- -3'
miRNA:   3'- uGCGCGCCg------CGGCGG-----------C-CGAUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 95471 0.67 0.57608
Target:  5'- gGCGCGCGucacGCGgCGCCGGUgucgGCGg- -3'
miRNA:   3'- -UGCGCGC----CGCgGCGGCCGaug-CGCag -5'
1602 5' -64.9 NC_001347.2 + 197560 0.67 0.57608
Target:  5'- -gGCGUGGCgGCCGaCGGCaGCGUGc- -3'
miRNA:   3'- ugCGCGCCG-CGGCgGCCGaUGCGCag -5'
1602 5' -64.9 NC_001347.2 + 40459 0.66 0.59473
Target:  5'- gACGCuGCcuGCGCacuGCCGG-UGCGUGUCg -3'
miRNA:   3'- -UGCG-CGc-CGCGg--CGGCCgAUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 79178 0.66 0.604092
Target:  5'- gACGaggaGCGGCGCgGCCcagaGCGUGUCg -3'
miRNA:   3'- -UGCg---CGCCGCGgCGGccgaUGCGCAG- -5'
1602 5' -64.9 NC_001347.2 + 99303 0.66 0.604092
Target:  5'- gGCGCGUaaCGCUGCaCGGCUagauguuuACGaCGUCg -3'
miRNA:   3'- -UGCGCGccGCGGCG-GCCGA--------UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 208846 0.66 0.604092
Target:  5'- -aGCGCcaGCGcCCGCCGGCgAUguaacagcugGCGUCg -3'
miRNA:   3'- ugCGCGc-CGC-GGCGGCCGaUG----------CGCAG- -5'
1602 5' -64.9 NC_001347.2 + 94310 0.66 0.604092
Target:  5'- -aGCGCGauCGCCGCCcacGGCguccucgGCGuCGUCg -3'
miRNA:   3'- ugCGCGCc-GCGGCGG---CCGa------UGC-GCAG- -5'
1602 5' -64.9 NC_001347.2 + 141814 0.66 0.604092
Target:  5'- gGCGUGcCGGCGCCcaugGCCGccacuGUgGCGCGUg -3'
miRNA:   3'- -UGCGC-GCCGCGG----CGGC-----CGaUGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 65189 0.66 0.613471
Target:  5'- -aGUGCGGCGauggcUCGCCGGC--CGUGUa -3'
miRNA:   3'- ugCGCGCCGC-----GGCGGCCGauGCGCAg -5'
1602 5' -64.9 NC_001347.2 + 142422 0.66 0.604092
Target:  5'- cGCGCccaGUGGCGUCgGCgCGGCguccgGCGUCg -3'
miRNA:   3'- -UGCG---CGCCGCGG-CG-GCCGaug--CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.