miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16020 3' -50.4 NC_004065.1 + 77062 0.66 0.999106
Target:  5'- cGGAauaGCAgAGCaUCuccacgucgGAGAUCUCCUCGu -3'
miRNA:   3'- cUCUg--CGU-UCGaAG---------UUCUAGAGGAGC- -5'
16020 3' -50.4 NC_004065.1 + 24211 0.66 0.999106
Target:  5'- aAGACGC-GGUUggCGAGGUUUCgCUCGc -3'
miRNA:   3'- cUCUGCGuUCGAa-GUUCUAGAG-GAGC- -5'
16020 3' -50.4 NC_004065.1 + 31399 0.66 0.998913
Target:  5'- -uGGCGCGcaaccuggaggAGCUcggccguuUCGGGAUCUCC-CGa -3'
miRNA:   3'- cuCUGCGU-----------UCGA--------AGUUCUAGAGGaGC- -5'
16020 3' -50.4 NC_004065.1 + 140467 0.66 0.998913
Target:  5'- gGAGACGgGccGCUaccgCAAGAUCUCCa-- -3'
miRNA:   3'- -CUCUGCgUu-CGAa---GUUCUAGAGGagc -5'
16020 3' -50.4 NC_004065.1 + 113492 0.66 0.998685
Target:  5'- -cGACGCGuucgacaacGGCUaCAAGGUCUUCUg- -3'
miRNA:   3'- cuCUGCGU---------UCGAaGUUCUAGAGGAgc -5'
16020 3' -50.4 NC_004065.1 + 38570 0.66 0.998685
Target:  5'- -uGcCGCAccucGGCgUCGAGGaCUCCUCGg -3'
miRNA:   3'- cuCuGCGU----UCGaAGUUCUaGAGGAGC- -5'
16020 3' -50.4 NC_004065.1 + 185263 0.66 0.998529
Target:  5'- cGGGCGCGGGUagaagauguacucgUCGAGGaugUCUUCUCGg -3'
miRNA:   3'- cUCUGCGUUCGa-------------AGUUCU---AGAGGAGC- -5'
16020 3' -50.4 NC_004065.1 + 96704 0.66 0.998417
Target:  5'- gGGGACGaagacGGCgauuUCGAcGGUCUCCUCu -3'
miRNA:   3'- -CUCUGCgu---UCGa---AGUU-CUAGAGGAGc -5'
16020 3' -50.4 NC_004065.1 + 176096 0.67 0.997743
Target:  5'- cGAGAagccgcCGCAAGCgguauccugaCGGGcgCUCCUCGc -3'
miRNA:   3'- -CUCU------GCGUUCGaa--------GUUCuaGAGGAGC- -5'
16020 3' -50.4 NC_004065.1 + 226197 0.67 0.997324
Target:  5'- aGGGCGCGGGCUcCAcGGAga-CCUCGg -3'
miRNA:   3'- cUCUGCGUUCGAaGU-UCUagaGGAGC- -5'
16020 3' -50.4 NC_004065.1 + 207977 0.67 0.997324
Target:  5'- gGAGcCGCcAGCUUCAuGAUCUUCa-- -3'
miRNA:   3'- -CUCuGCGuUCGAAGUuCUAGAGGagc -5'
16020 3' -50.4 NC_004065.1 + 169559 0.67 0.996293
Target:  5'- aGGGCGC-GGCagUCGAGAgCUCCgUCGa -3'
miRNA:   3'- cUCUGCGuUCGa-AGUUCUaGAGG-AGC- -5'
16020 3' -50.4 NC_004065.1 + 115249 0.67 0.996293
Target:  5'- ---uCGCcGGCUUCGAGAUcCUCgUCGu -3'
miRNA:   3'- cucuGCGuUCGAAGUUCUA-GAGgAGC- -5'
16020 3' -50.4 NC_004065.1 + 112973 0.67 0.995666
Target:  5'- cGAGACGCAAGa-UC-AGAUCUUCgugaCGg -3'
miRNA:   3'- -CUCUGCGUUCgaAGuUCUAGAGGa---GC- -5'
16020 3' -50.4 NC_004065.1 + 182198 0.67 0.995666
Target:  5'- aGGGcCGCuuacuucGGCUUCAAgcagaucaccGAUCUCCUCu -3'
miRNA:   3'- -CUCuGCGu------UCGAAGUU----------CUAGAGGAGc -5'
16020 3' -50.4 NC_004065.1 + 100762 0.68 0.994152
Target:  5'- cGGACGCGGGCagaAAGAagUUCUCGa -3'
miRNA:   3'- cUCUGCGUUCGaagUUCUagAGGAGC- -5'
16020 3' -50.4 NC_004065.1 + 47772 0.68 0.994066
Target:  5'- gGGGugGCcgacgagGAGCccCucGAUCUCCUCGg -3'
miRNA:   3'- -CUCugCG-------UUCGaaGuuCUAGAGGAGC- -5'
16020 3' -50.4 NC_004065.1 + 80549 0.68 0.993803
Target:  5'- uAGAUGaucuugacccggaGGGCUUCGGGGUCgauagCCUCGg -3'
miRNA:   3'- cUCUGCg------------UUCGAAGUUCUAGa----GGAGC- -5'
16020 3' -50.4 NC_004065.1 + 4983 0.68 0.993249
Target:  5'- -cGACGUgccucGGGCUUCAAcGUCUCCUa- -3'
miRNA:   3'- cuCUGCG-----UUCGAAGUUcUAGAGGAgc -5'
16020 3' -50.4 NC_004065.1 + 52032 0.68 0.992239
Target:  5'- aAGACGCGuaugAGC-UCGuuGGcaGUCUCCUCGg -3'
miRNA:   3'- cUCUGCGU----UCGaAGU--UC--UAGAGGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.