miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16020 5' -57.1 NC_004065.1 + 143064 0.66 0.929138
Target:  5'- gGgCGAGGGGCGCUUcgggggCGACgaGCGa-- -3'
miRNA:   3'- -CgGUUCCUCGCGAG------GCUGgaCGCaaa -5'
16020 5' -57.1 NC_004065.1 + 1753 0.66 0.929138
Target:  5'- gGCCGAGGA-CGCUCCG-CCaGaCGa-- -3'
miRNA:   3'- -CGGUUCCUcGCGAGGCuGGaC-GCaaa -5'
16020 5' -57.1 NC_004065.1 + 19371 0.66 0.929138
Target:  5'- cGUCucGGucucGCGCUCgGGCCUGgGUa- -3'
miRNA:   3'- -CGGuuCCu---CGCGAGgCUGGACgCAaa -5'
16020 5' -57.1 NC_004065.1 + 205516 0.66 0.929138
Target:  5'- cGCCAucuuGGGgccGGCGCUCagGGCCgGCGg-- -3'
miRNA:   3'- -CGGU----UCC---UCGCGAGg-CUGGaCGCaaa -5'
16020 5' -57.1 NC_004065.1 + 186555 0.66 0.929138
Target:  5'- cGCCGAGGAcacGUGCUgCGGCggaugauguggCUGCGa-- -3'
miRNA:   3'- -CGGUUCCU---CGCGAgGCUG-----------GACGCaaa -5'
16020 5' -57.1 NC_004065.1 + 173962 0.66 0.929138
Target:  5'- cGCCAucGGGGUGgUCCacGACCUGgGg-- -3'
miRNA:   3'- -CGGUu-CCUCGCgAGG--CUGGACgCaaa -5'
16020 5' -57.1 NC_004065.1 + 192918 0.66 0.923395
Target:  5'- aGCgGGGGccggcucuuugauGGCGCUgaCCGAUCUGCGc-- -3'
miRNA:   3'- -CGgUUCC-------------UCGCGA--GGCUGGACGCaaa -5'
16020 5' -57.1 NC_004065.1 + 34937 0.66 0.918492
Target:  5'- cGCCccuGGGGgucugcgccgcGCGCUcgcCCGACCUGCa--- -3'
miRNA:   3'- -CGGu--UCCU-----------CGCGA---GGCUGGACGcaaa -5'
16020 5' -57.1 NC_004065.1 + 101890 0.66 0.912827
Target:  5'- cGCCGGGGcGGCucCUCCGAgCUGCu--- -3'
miRNA:   3'- -CGGUUCC-UCGc-GAGGCUgGACGcaaa -5'
16020 5' -57.1 NC_004065.1 + 201381 0.66 0.900822
Target:  5'- cGCCGGGGGGUGCcacgUCGACgcacagaUGCGUc- -3'
miRNA:   3'- -CGGUUCCUCGCGa---GGCUGg------ACGCAaa -5'
16020 5' -57.1 NC_004065.1 + 59014 0.67 0.894486
Target:  5'- gGCCAGGGucGGCGgUUCGugCUcGCGa-- -3'
miRNA:   3'- -CGGUUCC--UCGCgAGGCugGA-CGCaaa -5'
16020 5' -57.1 NC_004065.1 + 32877 0.67 0.887932
Target:  5'- gGUCGAGaGGCGCgCCGGCgaGCGUc- -3'
miRNA:   3'- -CGGUUCcUCGCGaGGCUGgaCGCAaa -5'
16020 5' -57.1 NC_004065.1 + 229496 0.67 0.887931
Target:  5'- cGCaCAGGGGGCGCgCC-ACC-GCGUa- -3'
miRNA:   3'- -CG-GUUCCUCGCGaGGcUGGaCGCAaa -5'
16020 5' -57.1 NC_004065.1 + 91263 0.67 0.887931
Target:  5'- cGCCAucGAcCGCgCCGACCUGCa--- -3'
miRNA:   3'- -CGGUucCUcGCGaGGCUGGACGcaaa -5'
16020 5' -57.1 NC_004065.1 + 131017 0.67 0.887931
Target:  5'- cGCCAaugagauaguGGGGGUGCUCUGGCg-GCGc-- -3'
miRNA:   3'- -CGGU----------UCCUCGCGAGGCUGgaCGCaaa -5'
16020 5' -57.1 NC_004065.1 + 53912 0.67 0.881162
Target:  5'- -gCGAGGAGCGC-CCGucaggauaccGCUUGCGg-- -3'
miRNA:   3'- cgGUUCCUCGCGaGGC----------UGGACGCaaa -5'
16020 5' -57.1 NC_004065.1 + 26939 0.67 0.866994
Target:  5'- gGCuCAAGGAcCGCUCCGgcgGCCgcgGCGg-- -3'
miRNA:   3'- -CG-GUUCCUcGCGAGGC---UGGa--CGCaaa -5'
16020 5' -57.1 NC_004065.1 + 146846 0.67 0.866994
Target:  5'- gGCCGccGGGAGCGC-CUGGUCUGCa--- -3'
miRNA:   3'- -CGGU--UCCUCGCGaGGCUGGACGcaaa -5'
16020 5' -57.1 NC_004065.1 + 141545 0.67 0.862584
Target:  5'- uCCGAGGAcGCGCUCuUcggcgucgcgcgcaaGACCUGCGa-- -3'
miRNA:   3'- cGGUUCCU-CGCGAG-G---------------CUGGACGCaaa -5'
16020 5' -57.1 NC_004065.1 + 136501 0.67 0.859605
Target:  5'- aGCCGGGGAGCuGgUCCGggaaGCCagGCGg-- -3'
miRNA:   3'- -CGGUUCCUCG-CgAGGC----UGGa-CGCaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.