miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 130419 0.66 0.846154
Target:  5'- cGACCguccGGCGGAauuCgUGCUGCagcaGCUGUg -3'
miRNA:   3'- cCUGGa---CUGCCU---GgGCGACGg---CGACG- -5'
16023 5' -60.5 NC_004065.1 + 65371 0.66 0.846154
Target:  5'- cGACCUGGgcgacgcgcgcCGcGACCCGaCUGUUccuccgagGCUGCg -3'
miRNA:   3'- cCUGGACU-----------GC-CUGGGC-GACGG--------CGACG- -5'
16023 5' -60.5 NC_004065.1 + 126715 0.66 0.846154
Target:  5'- -cGCCUG-CGGcgaccgcugaGCCUGCcGCCGCgGCc -3'
miRNA:   3'- ccUGGACuGCC----------UGGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 102928 0.66 0.846154
Target:  5'- uGGACggcGACGGAgCUGCUGCCuaaGCUc- -3'
miRNA:   3'- -CCUGga-CUGCCUgGGCGACGG---CGAcg -5'
16023 5' -60.5 NC_004065.1 + 129913 0.66 0.846154
Target:  5'- gGGGCCUGGCGGcACCUGUUuCC-CgagGUa -3'
miRNA:   3'- -CCUGGACUGCC-UGGGCGAcGGcGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 173874 0.66 0.846154
Target:  5'- uGAUC-GAUGcGACUCGCUcGCCgagGCUGCa -3'
miRNA:   3'- cCUGGaCUGC-CUGGGCGA-CGG---CGACG- -5'
16023 5' -60.5 NC_004065.1 + 86260 0.66 0.846154
Target:  5'- gGGACCguUGAUGaaacgguaGAUCUGCUGCCcgaGCUGg -3'
miRNA:   3'- -CCUGG--ACUGC--------CUGGGCGACGG---CGACg -5'
16023 5' -60.5 NC_004065.1 + 49658 0.66 0.846154
Target:  5'- uGGACCaguuucccgUGGCGGugCCGCcGgaGCagGCg -3'
miRNA:   3'- -CCUGG---------ACUGCCugGGCGaCggCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 32247 0.66 0.841616
Target:  5'- cGGACUcgccgccaucaucgGACGGcuccgaguGCCCGCUGuCCGCg-- -3'
miRNA:   3'- -CCUGGa-------------CUGCC--------UGGGCGAC-GGCGacg -5'
16023 5' -60.5 NC_004065.1 + 192340 0.66 0.838557
Target:  5'- gGGACgUGACGGGCuCCuCUGUCaCgaggGCg -3'
miRNA:   3'- -CCUGgACUGCCUG-GGcGACGGcGa---CG- -5'
16023 5' -60.5 NC_004065.1 + 188907 0.66 0.838557
Target:  5'- cGGCCcGAC-GACCCGgacacCUGCCGCUc- -3'
miRNA:   3'- cCUGGaCUGcCUGGGC-----GACGGCGAcg -5'
16023 5' -60.5 NC_004065.1 + 109863 0.66 0.838557
Target:  5'- aGGugCcgGGCGGugCCaccgGCgucGCCGCgGCc -3'
miRNA:   3'- -CCugGa-CUGCCugGG----CGa--CGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 130613 0.66 0.830795
Target:  5'- -uGCCgcuCGGGCCC-CUGCUGCgaGCg -3'
miRNA:   3'- ccUGGacuGCCUGGGcGACGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 61823 0.66 0.828435
Target:  5'- cGGACUcGACGGcgucgucaaacaagGCgUCGC-GCCGCUGUc -3'
miRNA:   3'- -CCUGGaCUGCC--------------UG-GGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 178832 0.66 0.822874
Target:  5'- aGGACCUugaugaGugGGAgccUCCGUguggccuguaccUGCUGCUGUc -3'
miRNA:   3'- -CCUGGA------CugCCU---GGGCG------------ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 159723 0.66 0.822874
Target:  5'- cGGCCgugugGGgGGugCUGCUgaagGCCGCcGCg -3'
miRNA:   3'- cCUGGa----CUgCCugGGCGA----CGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 33588 0.66 0.822874
Target:  5'- -cGCgUGGCGGACggcaucaCGaUGCUGCUGCg -3'
miRNA:   3'- ccUGgACUGCCUGg------GCgACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 41154 0.66 0.822874
Target:  5'- uGGuACCUGAgccagaGGACCaucuCGUUGUagaGCUGCg -3'
miRNA:   3'- -CC-UGGACUg-----CCUGG----GCGACGg--CGACG- -5'
16023 5' -60.5 NC_004065.1 + 67807 0.66 0.822874
Target:  5'- cGGGCaagaagaGACGGGCgCCGgacgUGCCGCcGCa -3'
miRNA:   3'- -CCUGga-----CUGCCUG-GGCg---ACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 170446 0.66 0.822874
Target:  5'- aGGACgCcGcCGGAggcgccUUCGCUGCCGCcGCa -3'
miRNA:   3'- -CCUG-GaCuGCCU------GGGCGACGGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.